Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.61■□□□□ 0.73
USE1Q9NZ43 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.61■□□□□ 0.73
USE1Q9NZ43 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.61■□□□□ 0.73
USE1Q9NZ43 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.61■□□□□ 0.73
USE1Q9NZ43 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USE1Q9NZ43 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
USE1Q9NZ43 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USE1Q9NZ43 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.61■□□□□ 0.73
USE1Q9NZ43 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USE1Q9NZ43 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 AC010980.1-201ENST00000587192 1142 ntBASIC19.6■□□□□ 0.73
USE1Q9NZ43 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.6■□□□□ 0.73
USE1Q9NZ43 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USE1Q9NZ43 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USE1Q9NZ43 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USE1Q9NZ43 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.59■□□□□ 0.73
USE1Q9NZ43 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
USE1Q9NZ43 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.59■□□□□ 0.73
USE1Q9NZ43 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USE1Q9NZ43 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USE1Q9NZ43 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.59■□□□□ 0.73
USE1Q9NZ43 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USE1Q9NZ43 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
USE1Q9NZ43 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.59■□□□□ 0.73
USE1Q9NZ43 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USE1Q9NZ43 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
USE1Q9NZ43 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USE1Q9NZ43 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USE1Q9NZ43 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.58■□□□□ 0.73
USE1Q9NZ43 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.58■□□□□ 0.73
USE1Q9NZ43 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.73
USE1Q9NZ43 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
USE1Q9NZ43 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
USE1Q9NZ43 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.58■□□□□ 0.72
USE1Q9NZ43 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.58■□□□□ 0.72
USE1Q9NZ43 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.58■□□□□ 0.72
USE1Q9NZ43 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
USE1Q9NZ43 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USE1Q9NZ43 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USE1Q9NZ43 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
USE1Q9NZ43 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USE1Q9NZ43 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USE1Q9NZ43 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USE1Q9NZ43 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USE1Q9NZ43 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USE1Q9NZ43 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
USE1Q9NZ43 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USE1Q9NZ43 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.57■□□□□ 0.72
USE1Q9NZ43 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.57■□□□□ 0.72
USE1Q9NZ43 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.57■□□□□ 0.72
USE1Q9NZ43 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USE1Q9NZ43 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.57■□□□□ 0.72
USE1Q9NZ43 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USE1Q9NZ43 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USE1Q9NZ43 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USE1Q9NZ43 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.57■□□□□ 0.72
USE1Q9NZ43 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USE1Q9NZ43 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USE1Q9NZ43 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USE1Q9NZ43 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USE1Q9NZ43 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
USE1Q9NZ43 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 AC073314.1-201ENST00000568729 2216 ntBASIC19.56■□□□□ 0.72
USE1Q9NZ43 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USE1Q9NZ43 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USE1Q9NZ43 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USE1Q9NZ43 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.56■□□□□ 0.72
USE1Q9NZ43 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms