Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VTA1Q9NP79 AC092053.2-201ENST00000640557 1818 ntBASIC23.8■■□□□ 1.4
VTA1Q9NP79 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC23.79■■□□□ 1.4
VTA1Q9NP79 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.79■■□□□ 1.4
VTA1Q9NP79 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
VTA1Q9NP79 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VTA1Q9NP79 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.79■■□□□ 1.4
VTA1Q9NP79 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
VTA1Q9NP79 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
VTA1Q9NP79 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.79■■□□□ 1.4
VTA1Q9NP79 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.79■■□□□ 1.4
VTA1Q9NP79 RNA5SP413-201ENST00000516373 109 ntBASIC23.79■■□□□ 1.4
VTA1Q9NP79 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
VTA1Q9NP79 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
VTA1Q9NP79 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
VTA1Q9NP79 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VTA1Q9NP79 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VTA1Q9NP79 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VTA1Q9NP79 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VTA1Q9NP79 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VTA1Q9NP79 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 POU5F1P3-201ENST00000428824 1078 ntBASIC23.78■■□□□ 1.4
VTA1Q9NP79 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VTA1Q9NP79 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.78■■□□□ 1.4
VTA1Q9NP79 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
VTA1Q9NP79 AC010980.2-201ENST00000587099 1412 ntBASIC23.77■■□□□ 1.4
VTA1Q9NP79 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.77■■□□□ 1.4
VTA1Q9NP79 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
VTA1Q9NP79 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.77■■□□□ 1.4
VTA1Q9NP79 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VTA1Q9NP79 AC066615.1-201ENST00000640911 628 ntBASIC23.77■■□□□ 1.4
VTA1Q9NP79 MYC-209ENST00000641252 345 ntBASIC23.77■■□□□ 1.4
VTA1Q9NP79 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
VTA1Q9NP79 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
VTA1Q9NP79 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
VTA1Q9NP79 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.76■■□□□ 1.39
VTA1Q9NP79 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VTA1Q9NP79 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
VTA1Q9NP79 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VTA1Q9NP79 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.76■■□□□ 1.39
VTA1Q9NP79 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VTA1Q9NP79 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VTA1Q9NP79 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VTA1Q9NP79 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.76■■□□□ 1.39
VTA1Q9NP79 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VTA1Q9NP79 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VTA1Q9NP79 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VTA1Q9NP79 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VTA1Q9NP79 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23.75■■□□□ 1.39
VTA1Q9NP79 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.75■■□□□ 1.39
VTA1Q9NP79 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.75■■□□□ 1.39
VTA1Q9NP79 AC083880.1-201ENST00000608266 535 ntBASIC23.75■■□□□ 1.39
VTA1Q9NP79 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VTA1Q9NP79 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.75■■□□□ 1.39
VTA1Q9NP79 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VTA1Q9NP79 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VTA1Q9NP79 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VTA1Q9NP79 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
VTA1Q9NP79 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.74■■□□□ 1.39
VTA1Q9NP79 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
VTA1Q9NP79 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VTA1Q9NP79 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.74■■□□□ 1.39
VTA1Q9NP79 AC097658.1-201ENST00000475555 843 ntBASIC23.74■■□□□ 1.39
VTA1Q9NP79 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.74■■□□□ 1.39
VTA1Q9NP79 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
VTA1Q9NP79 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.74■■□□□ 1.39
VTA1Q9NP79 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
VTA1Q9NP79 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VTA1Q9NP79 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VTA1Q9NP79 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VTA1Q9NP79 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
VTA1Q9NP79 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.73■■□□□ 1.39
VTA1Q9NP79 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VTA1Q9NP79 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VTA1Q9NP79 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.73■■□□□ 1.39
VTA1Q9NP79 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
VTA1Q9NP79 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
VTA1Q9NP79 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VTA1Q9NP79 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
VTA1Q9NP79 ITM2C-210ENST00000620962 501 ntBASIC23.73■■□□□ 1.39
VTA1Q9NP79 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.73■■□□□ 1.39
VTA1Q9NP79 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
VTA1Q9NP79 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VTA1Q9NP79 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VTA1Q9NP79 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VTA1Q9NP79 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VTA1Q9NP79 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.72■■□□□ 1.39
VTA1Q9NP79 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VTA1Q9NP79 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
VTA1Q9NP79 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.72■■□□□ 1.39
VTA1Q9NP79 AC091874.3-201ENST00000512672 1195 ntBASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms