Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
RC3H2Q9HBD1 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC22.74■■□□□ 1.23
RC3H2Q9HBD1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC22.74■■□□□ 1.23
RC3H2Q9HBD1 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 AC128676.1-201ENST00000454392 318 ntBASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 UNC93B5-201ENST00000530315 699 ntBASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.73■■□□□ 1.23
RC3H2Q9HBD1 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.72■■□□□ 1.23
RC3H2Q9HBD1 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 OR2A1-AS1-201ENST00000462305 773 ntBASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 PBX1-209ENST00000485769 834 ntTSL 2 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 ARL16-209ENST00000573715 763 ntTSL 3 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 ARL16-211ENST00000576135 694 ntTSL 3 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 MMD2-204ENST00000612910 778 ntTSL 5 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
RC3H2Q9HBD1 AC139530.1-201ENST00000575312 1977 ntBASIC22.7■■□□□ 1.23
RC3H2Q9HBD1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
RC3H2Q9HBD1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
RC3H2Q9HBD1 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 AC026366.1-201ENST00000488803 879 ntBASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RC3H2Q9HBD1 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 AP006294.2-201ENST00000641667 209 ntBASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RC3H2Q9HBD1 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RC3H2Q9HBD1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RC3H2Q9HBD1 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RC3H2Q9HBD1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.68■■□□□ 1.22
RC3H2Q9HBD1 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC22.68■■□□□ 1.22
RC3H2Q9HBD1 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.68■■□□□ 1.22
RC3H2Q9HBD1 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H2Q9HBD1 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H2Q9HBD1 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC22.67■■□□□ 1.22
RC3H2Q9HBD1 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H2Q9HBD1 AL596275.1-201ENST00000423464 877 ntBASIC22.67■■□□□ 1.22
RC3H2Q9HBD1 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H2Q9HBD1 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC22.67■■□□□ 1.22
RC3H2Q9HBD1 AC142381.4-202ENST00000563973 229 ntBASIC22.67■■□□□ 1.22
RC3H2Q9HBD1 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H2Q9HBD1 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H2Q9HBD1 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms