Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
USP42Q9H9J4 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC27.03■■□□□ 1.92
USP42Q9H9J4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
USP42Q9H9J4 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
USP42Q9H9J4 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
USP42Q9H9J4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
USP42Q9H9J4 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC27.03■■□□□ 1.92
USP42Q9H9J4 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
USP42Q9H9J4 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC27.03■■□□□ 1.92
USP42Q9H9J4 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
USP42Q9H9J4 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
USP42Q9H9J4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
USP42Q9H9J4 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
USP42Q9H9J4 COMT-203ENST00000403184 2217 ntTSL 2 BASIC27.02■■□□□ 1.92
USP42Q9H9J4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC27.02■■□□□ 1.92
USP42Q9H9J4 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
USP42Q9H9J4 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
USP42Q9H9J4 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC27.02■■□□□ 1.92
USP42Q9H9J4 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
USP42Q9H9J4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC27.02■■□□□ 1.92
USP42Q9H9J4 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
USP42Q9H9J4 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
USP42Q9H9J4 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
USP42Q9H9J4 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
USP42Q9H9J4 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC27.02■■□□□ 1.92
USP42Q9H9J4 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC27.02■■□□□ 1.92
USP42Q9H9J4 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.92
USP42Q9H9J4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC27.01■■□□□ 1.92
USP42Q9H9J4 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
USP42Q9H9J4 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC27.01■■□□□ 1.91
USP42Q9H9J4 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC27.01■■□□□ 1.91
USP42Q9H9J4 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC27.01■■□□□ 1.91
USP42Q9H9J4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
USP42Q9H9J4 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC27.01■■□□□ 1.91
USP42Q9H9J4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
USP42Q9H9J4 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC27.01■■□□□ 1.91
USP42Q9H9J4 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC27.01■■□□□ 1.91
USP42Q9H9J4 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC27.01■■□□□ 1.91
USP42Q9H9J4 GALC-202ENST00000393568 2054 ntTSL 2 BASIC27.01■■□□□ 1.91
USP42Q9H9J4 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
USP42Q9H9J4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
USP42Q9H9J4 AC133561.1-201ENST00000568600 2415 ntBASIC27.01■■□□□ 1.91
USP42Q9H9J4 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
USP42Q9H9J4 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
USP42Q9H9J4 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC27■■□□□ 1.91
USP42Q9H9J4 AC097658.1-201ENST00000475555 843 ntBASIC27■■□□□ 1.91
USP42Q9H9J4 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC27■■□□□ 1.91
USP42Q9H9J4 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC27■■□□□ 1.91
USP42Q9H9J4 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC27■■□□□ 1.91
USP42Q9H9J4 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC27■■□□□ 1.91
USP42Q9H9J4 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC27■■□□□ 1.91
USP42Q9H9J4 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC27■■□□□ 1.91
USP42Q9H9J4 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC27■■□□□ 1.91
USP42Q9H9J4 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
USP42Q9H9J4 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP42Q9H9J4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP42Q9H9J4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP42Q9H9J4 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP42Q9H9J4 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP42Q9H9J4 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP42Q9H9J4 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 GAS7-202ENST00000396115 929 ntTSL 5 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 AC091874.3-201ENST00000512672 1195 ntBASIC26.99■■□□□ 1.91
USP42Q9H9J4 BET1L-207ENST00000529614 560 ntTSL 5 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 IRX5-204ENST00000560154 879 ntTSL 5 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
USP42Q9H9J4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC26.99■■□□□ 1.91
USP42Q9H9J4 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP42Q9H9J4 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP42Q9H9J4 AC087742.1-201ENST00000575880 1738 ntBASIC26.98■■□□□ 1.91
USP42Q9H9J4 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP42Q9H9J4 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP42Q9H9J4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
USP42Q9H9J4 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP42Q9H9J4 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC26.98■■□□□ 1.91
USP42Q9H9J4 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC26.98■■□□□ 1.91
USP42Q9H9J4 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
USP42Q9H9J4 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
USP42Q9H9J4 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC26.97■■□□□ 1.91
USP42Q9H9J4 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC26.97■■□□□ 1.91
USP42Q9H9J4 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
USP42Q9H9J4 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC26.97■■□□□ 1.91
USP42Q9H9J4 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC26.97■■□□□ 1.91
USP42Q9H9J4 AP006294.2-201ENST00000641667 209 ntBASIC26.97■■□□□ 1.91
USP42Q9H9J4 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
USP42Q9H9J4 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USP42Q9H9J4 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USP42Q9H9J4 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC26.96■■□□□ 1.91
USP42Q9H9J4 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC26.96■■□□□ 1.91
USP42Q9H9J4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC26.96■■□□□ 1.91
USP42Q9H9J4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC26.96■■□□□ 1.91
USP42Q9H9J4 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms