Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.12■□□□□ 0.81
PIF1Q9H611 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.11■□□□□ 0.81
PIF1Q9H611 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PIF1Q9H611 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.11■□□□□ 0.81
PIF1Q9H611 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PIF1Q9H611 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PIF1Q9H611 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PIF1Q9H611 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PIF1Q9H611 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PIF1Q9H611 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.11■□□□□ 0.81
PIF1Q9H611 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.11■□□□□ 0.81
PIF1Q9H611 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.11■□□□□ 0.81
PIF1Q9H611 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PIF1Q9H611 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PIF1Q9H611 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
PIF1Q9H611 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PIF1Q9H611 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
PIF1Q9H611 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.1■□□□□ 0.81
PIF1Q9H611 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.1■□□□□ 0.81
PIF1Q9H611 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
PIF1Q9H611 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.1■□□□□ 0.81
PIF1Q9H611 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.1■□□□□ 0.81
PIF1Q9H611 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PIF1Q9H611 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.1■□□□□ 0.81
PIF1Q9H611 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.1■□□□□ 0.81
PIF1Q9H611 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PIF1Q9H611 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PIF1Q9H611 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PIF1Q9H611 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.09■□□□□ 0.81
PIF1Q9H611 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PIF1Q9H611 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PIF1Q9H611 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PIF1Q9H611 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PIF1Q9H611 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
PIF1Q9H611 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PIF1Q9H611 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PIF1Q9H611 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.09■□□□□ 0.81
PIF1Q9H611 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
PIF1Q9H611 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PIF1Q9H611 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.08■□□□□ 0.81
PIF1Q9H611 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PIF1Q9H611 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PIF1Q9H611 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PIF1Q9H611 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.08■□□□□ 0.81
PIF1Q9H611 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PIF1Q9H611 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.08■□□□□ 0.81
PIF1Q9H611 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.08■□□□□ 0.81
PIF1Q9H611 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.08■□□□□ 0.8
PIF1Q9H611 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PIF1Q9H611 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
PIF1Q9H611 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.08■□□□□ 0.8
PIF1Q9H611 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
PIF1Q9H611 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
PIF1Q9H611 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PIF1Q9H611 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.07■□□□□ 0.8
PIF1Q9H611 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
PIF1Q9H611 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
PIF1Q9H611 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.07■□□□□ 0.8
PIF1Q9H611 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.07■□□□□ 0.8
PIF1Q9H611 MIR3181-201ENST00000578512 73 ntBASIC20.07■□□□□ 0.8
PIF1Q9H611 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.07■□□□□ 0.8
PIF1Q9H611 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
PIF1Q9H611 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
PIF1Q9H611 AC092667.1-201ENST00000434301 2586 ntBASIC20.07■□□□□ 0.8
PIF1Q9H611 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
PIF1Q9H611 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PIF1Q9H611 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.07■□□□□ 0.8
PIF1Q9H611 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.07■□□□□ 0.8
PIF1Q9H611 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PIF1Q9H611 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PIF1Q9H611 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PIF1Q9H611 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.06■□□□□ 0.8
PIF1Q9H611 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.06■□□□□ 0.8
PIF1Q9H611 AC010525.1-201ENST00000585559 441 ntBASIC20.06■□□□□ 0.8
PIF1Q9H611 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.06■□□□□ 0.8
PIF1Q9H611 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
PIF1Q9H611 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PIF1Q9H611 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.06■□□□□ 0.8
PIF1Q9H611 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PIF1Q9H611 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.06■□□□□ 0.8
PIF1Q9H611 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PIF1Q9H611 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PIF1Q9H611 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PIF1Q9H611 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PIF1Q9H611 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms