Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.87■■□□□ 1.09
COL25A1Q9BXS0 AL031963.3-201ENST00000606441 850 ntBASIC21.87■■□□□ 1.09
COL25A1Q9BXS0 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.87■■□□□ 1.09
COL25A1Q9BXS0 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL25A1Q9BXS0 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
COL25A1Q9BXS0 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL25A1Q9BXS0 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL25A1Q9BXS0 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL25A1Q9BXS0 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.87■■□□□ 1.09
COL25A1Q9BXS0 LINC01568-207ENST00000641790 1380 ntBASIC21.87■■□□□ 1.09
COL25A1Q9BXS0 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.86■■□□□ 1.09
COL25A1Q9BXS0 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL25A1Q9BXS0 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL25A1Q9BXS0 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.86■■□□□ 1.09
COL25A1Q9BXS0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.86■■□□□ 1.09
COL25A1Q9BXS0 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.86■■□□□ 1.09
COL25A1Q9BXS0 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.86■■□□□ 1.09
COL25A1Q9BXS0 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL25A1Q9BXS0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
COL25A1Q9BXS0 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 AL355355.2-201ENST00000442321 338 ntBASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.85■■□□□ 1.09
COL25A1Q9BXS0 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL25A1Q9BXS0 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.83■■□□□ 1.09
COL25A1Q9BXS0 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.83■■□□□ 1.09
COL25A1Q9BXS0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL25A1Q9BXS0 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
COL25A1Q9BXS0 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
COL25A1Q9BXS0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.83■■□□□ 1.09
COL25A1Q9BXS0 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.83■■□□□ 1.09
COL25A1Q9BXS0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.83■■□□□ 1.09
COL25A1Q9BXS0 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.83■■□□□ 1.09
COL25A1Q9BXS0 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.83■■□□□ 1.09
COL25A1Q9BXS0 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
COL25A1Q9BXS0 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 AC023511.2-201ENST00000618803 211 ntBASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
COL25A1Q9BXS0 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 AC009947.2-201ENST00000444014 672 ntBASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms