Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
RNF139Q8WU17 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
RNF139Q8WU17 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RNF139Q8WU17 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RNF139Q8WU17 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.22■■□□□ 1.15
RNF139Q8WU17 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
RNF139Q8WU17 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RNF139Q8WU17 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC22.22■■□□□ 1.15
RNF139Q8WU17 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC22.22■■□□□ 1.15
RNF139Q8WU17 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC22.22■■□□□ 1.15
RNF139Q8WU17 AC104187.1-201ENST00000607510 612 ntBASIC22.22■■□□□ 1.15
RNF139Q8WU17 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC22.22■■□□□ 1.15
RNF139Q8WU17 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF139Q8WU17 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF139Q8WU17 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF139Q8WU17 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RNF139Q8WU17 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RNF139Q8WU17 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF139Q8WU17 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC22.21■■□□□ 1.15
RNF139Q8WU17 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF139Q8WU17 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
RNF139Q8WU17 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF139Q8WU17 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RNF139Q8WU17 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF139Q8WU17 PKD1P6-201ENST00000343738 4769 ntBASIC22.2■■□□□ 1.14
RNF139Q8WU17 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RNF139Q8WU17 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
RNF139Q8WU17 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RNF139Q8WU17 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC22.2■■□□□ 1.14
RNF139Q8WU17 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC22.2■■□□□ 1.14
RNF139Q8WU17 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RNF139Q8WU17 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.2■■□□□ 1.14
RNF139Q8WU17 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RNF139Q8WU17 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RNF139Q8WU17 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
RNF139Q8WU17 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC22.2■■□□□ 1.14
RNF139Q8WU17 AC026471.6-201ENST00000622954 1905 ntBASIC22.19■■□□□ 1.14
RNF139Q8WU17 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
RNF139Q8WU17 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF139Q8WU17 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC22.19■■□□□ 1.14
RNF139Q8WU17 AC016769.1-201ENST00000409132 1010 ntBASIC22.19■■□□□ 1.14
RNF139Q8WU17 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC22.19■■□□□ 1.14
RNF139Q8WU17 SERP1-208ENST00000491660 830 ntTSL 2 BASIC22.19■■□□□ 1.14
RNF139Q8WU17 AC137761.2-201ENST00000561729 223 ntBASIC22.19■■□□□ 1.14
RNF139Q8WU17 AC145350.3-201ENST00000569033 163 ntBASIC22.19■■□□□ 1.14
RNF139Q8WU17 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC22.19■■□□□ 1.14
RNF139Q8WU17 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC22.19■■□□□ 1.14
RNF139Q8WU17 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF139Q8WU17 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
RNF139Q8WU17 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RNF139Q8WU17 AC010542.4-201ENST00000563151 1910 ntBASIC22.19■■□□□ 1.14
RNF139Q8WU17 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC22.19■■□□□ 1.14
RNF139Q8WU17 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF139Q8WU17 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF139Q8WU17 FBXW4P1-201ENST00000426721 2239 ntBASIC22.18■■□□□ 1.14
RNF139Q8WU17 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC22.18■■□□□ 1.14
RNF139Q8WU17 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF139Q8WU17 AC003102.1-202ENST00000563394 1796 ntBASIC22.18■■□□□ 1.14
RNF139Q8WU17 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF139Q8WU17 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF139Q8WU17 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
RNF139Q8WU17 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RNF139Q8WU17 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.18■■□□□ 1.14
RNF139Q8WU17 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF139Q8WU17 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF139Q8WU17 BID-212ENST00000614949 1988 ntTSL 5 BASIC22.18■■□□□ 1.14
RNF139Q8WU17 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF139Q8WU17 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF139Q8WU17 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF139Q8WU17 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC22.17■■□□□ 1.14
RNF139Q8WU17 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RNF139Q8WU17 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RNF139Q8WU17 AC053503.5-201ENST00000601508 636 ntBASIC22.17■■□□□ 1.14
RNF139Q8WU17 IKBKGP1-201ENST00000612193 1073 ntBASIC22.17■■□□□ 1.14
RNF139Q8WU17 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC22.17■■□□□ 1.14
RNF139Q8WU17 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF139Q8WU17 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF139Q8WU17 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF139Q8WU17 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF139Q8WU17 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF139Q8WU17 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF139Q8WU17 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF139Q8WU17 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.16■■□□□ 1.14
RNF139Q8WU17 EEF1DP3-203ENST00000566025 782 ntBASIC22.16■■□□□ 1.14
RNF139Q8WU17 AL137784.2-201ENST00000607332 1000 ntBASIC22.16■■□□□ 1.14
RNF139Q8WU17 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.16■■□□□ 1.14
RNF139Q8WU17 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF139Q8WU17 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
RNF139Q8WU17 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF139Q8WU17 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF139Q8WU17 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
RNF139Q8WU17 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF139Q8WU17 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF139Q8WU17 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF139Q8WU17 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.15■■□□□ 1.14
RNF139Q8WU17 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF139Q8WU17 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC22.15■■□□□ 1.14
RNF139Q8WU17 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF139Q8WU17 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF139Q8WU17 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms