Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 AC148477.6-201ENST00000623746 465 ntBASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CLRN3Q8NCR9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 AC116562.4-201ENST00000641316 2276 ntBASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 AL032819.2-201ENST00000624543 2162 ntBASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLRN3Q8NCR9 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLRN3Q8NCR9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.84■□□□□ 0.29
CLRN3Q8NCR9 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CLRN3Q8NCR9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.83■□□□□ 0.29
CLRN3Q8NCR9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
CLRN3Q8NCR9 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC16.83■□□□□ 0.29
CLRN3Q8NCR9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CLRN3Q8NCR9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN3Q8NCR9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CLRN3Q8NCR9 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN3Q8NCR9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN3Q8NCR9 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN3Q8NCR9 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.83■□□□□ 0.28
CLRN3Q8NCR9 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN3Q8NCR9 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN3Q8NCR9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN3Q8NCR9 LINC01971-201ENST00000617888 1048 ntBASIC16.83■□□□□ 0.28
CLRN3Q8NCR9 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms