Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC25.94■■□□□ 1.74
USP48Q86UV5 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
USP48Q86UV5 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC25.94■■□□□ 1.74
USP48Q86UV5 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
USP48Q86UV5 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
USP48Q86UV5 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC25.93■■□□□ 1.74
USP48Q86UV5 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
USP48Q86UV5 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
USP48Q86UV5 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP48Q86UV5 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC25.93■■□□□ 1.74
USP48Q86UV5 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
USP48Q86UV5 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
USP48Q86UV5 AC137767.1-201ENST00000602918 1920 ntBASIC25.92■■□□□ 1.74
USP48Q86UV5 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC25.92■■□□□ 1.74
USP48Q86UV5 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
USP48Q86UV5 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
USP48Q86UV5 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
USP48Q86UV5 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
USP48Q86UV5 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
USP48Q86UV5 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
USP48Q86UV5 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
USP48Q86UV5 AC079630.1-202ENST00000618127 1840 ntBASIC25.91■■□□□ 1.74
USP48Q86UV5 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC25.91■■□□□ 1.74
USP48Q86UV5 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
USP48Q86UV5 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC25.91■■□□□ 1.74
USP48Q86UV5 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
USP48Q86UV5 USP45-205ENST00000472914 1617 ntTSL 5 BASIC25.91■■□□□ 1.74
USP48Q86UV5 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
USP48Q86UV5 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC25.9■■□□□ 1.74
USP48Q86UV5 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC25.9■■□□□ 1.74
USP48Q86UV5 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
USP48Q86UV5 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
USP48Q86UV5 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
USP48Q86UV5 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC25.9■■□□□ 1.74
USP48Q86UV5 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
USP48Q86UV5 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
USP48Q86UV5 AC009237.3-201ENST00000393279 1427 ntBASIC25.89■■□□□ 1.74
USP48Q86UV5 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC25.89■■□□□ 1.74
USP48Q86UV5 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
USP48Q86UV5 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
USP48Q86UV5 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC25.89■■□□□ 1.74
USP48Q86UV5 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC25.89■■□□□ 1.74
USP48Q86UV5 APTR-203ENST00000430801 583 ntTSL 5 BASIC25.89■■□□□ 1.74
USP48Q86UV5 RPS2P52-201ENST00000469610 820 ntBASIC25.89■■□□□ 1.74
USP48Q86UV5 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC25.89■■□□□ 1.74
USP48Q86UV5 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.73
USP48Q86UV5 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.73
USP48Q86UV5 AC242852.2-201ENST00000615738 1807 ntBASIC25.88■■□□□ 1.73
USP48Q86UV5 MYB-221ENST00000527615 2381 ntTSL 5 BASIC25.88■■□□□ 1.73
USP48Q86UV5 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
USP48Q86UV5 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC25.88■■□□□ 1.73
USP48Q86UV5 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC25.88■■□□□ 1.73
USP48Q86UV5 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
USP48Q86UV5 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC25.88■■□□□ 1.73
USP48Q86UV5 MIR4758-201ENST00000577688 71 ntBASIC25.88■■□□□ 1.73
USP48Q86UV5 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
USP48Q86UV5 AC007375.3-201ENST00000600936 2314 ntBASIC25.88■■□□□ 1.73
USP48Q86UV5 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
USP48Q86UV5 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
USP48Q86UV5 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
USP48Q86UV5 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP48Q86UV5 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP48Q86UV5 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP48Q86UV5 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP48Q86UV5 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
USP48Q86UV5 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC25.87■■□□□ 1.73
USP48Q86UV5 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC25.87■■□□□ 1.73
USP48Q86UV5 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
USP48Q86UV5 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
USP48Q86UV5 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC25.87■■□□□ 1.73
USP48Q86UV5 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USP48Q86UV5 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
USP48Q86UV5 EFS-203ENST00000429593 2610 ntTSL 2 BASIC25.86■■□□□ 1.73
USP48Q86UV5 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
USP48Q86UV5 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
USP48Q86UV5 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.86■■□□□ 1.73
USP48Q86UV5 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP48Q86UV5 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
USP48Q86UV5 SERP1-208ENST00000491660 830 ntTSL 2 BASIC25.86■■□□□ 1.73
USP48Q86UV5 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC25.86■■□□□ 1.73
USP48Q86UV5 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP48Q86UV5 PXK-203ENST00000383715 1756 ntTSL 5 BASIC25.86■■□□□ 1.73
USP48Q86UV5 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
USP48Q86UV5 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
USP48Q86UV5 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP48Q86UV5 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP48Q86UV5 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
USP48Q86UV5 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP48Q86UV5 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP48Q86UV5 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP48Q86UV5 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP48Q86UV5 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
USP48Q86UV5 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC25.85■■□□□ 1.73
USP48Q86UV5 AC010536.3-201ENST00000620306 533 ntBASIC25.85■■□□□ 1.73
USP48Q86UV5 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC25.85■■□□□ 1.73
USP48Q86UV5 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC25.85■■□□□ 1.73
USP48Q86UV5 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP48Q86UV5 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC25.85■■□□□ 1.73
USP48Q86UV5 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms