Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD3Q3KNS1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 Z98882.1-201ENST00000622160 2253 ntBASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 NTF6G-201ENST00000591094 616 ntBASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD3Q3KNS1 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 AC005224.4-201ENST00000583262 1652 ntBASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 AC055733.4-201ENST00000638462 1354 ntBASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD3Q3KNS1 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PTCHD3Q3KNS1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD3Q3KNS1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 AL137060.1-201ENST00000618151 2648 ntBASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTCHD3Q3KNS1 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 TPRG1LP1-201ENST00000598702 760 ntBASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 PKD1P6-201ENST00000343738 4769 ntBASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTCHD3Q3KNS1 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms