Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
SHROOM1Q2M3G4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
SHROOM1Q2M3G4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC24.83■■□□□ 1.57
SHROOM1Q2M3G4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
SHROOM1Q2M3G4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SHROOM1Q2M3G4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
SHROOM1Q2M3G4 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC24.83■■□□□ 1.57
SHROOM1Q2M3G4 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SHROOM1Q2M3G4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.56
SHROOM1Q2M3G4 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.56
SHROOM1Q2M3G4 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 RBM17P2-201ENST00000616397 1405 ntBASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SHROOM1Q2M3G4 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 MKRN4P-201ENST00000444706 1521 ntBASIC24.81■■□□□ 1.56
SHROOM1Q2M3G4 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 AC008175.2-201ENST00000612840 297 ntBASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 TMEM191A-211ENST00000637163 1067 ntBASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SHROOM1Q2M3G4 GALC-202ENST00000393568 2054 ntTSL 2 BASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 AC133041.1-202ENST00000642053 222 ntBASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC24.79■■□□□ 1.56
SHROOM1Q2M3G4 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 AC127496.7-201ENST00000625110 1798 ntBASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC24.78■■□□□ 1.56
SHROOM1Q2M3G4 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 POU5F1P4-201ENST00000413175 1085 ntBASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 PPP1R14BP2-201ENST00000426284 444 ntBASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 AC073210.2-201ENST00000430369 194 ntBASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
SHROOM1Q2M3G4 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC24.76■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms