Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
RNF4P78317 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF4P78317 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
RNF4P78317 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RNF4P78317 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.58■□□□□ 0.73
RNF4P78317 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.58■□□□□ 0.73
RNF4P78317 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RNF4P78317 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.58■□□□□ 0.73
RNF4P78317 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
RNF4P78317 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
RNF4P78317 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
RNF4P78317 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.58■□□□□ 0.72
RNF4P78317 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.58■□□□□ 0.72
RNF4P78317 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.58■□□□□ 0.72
RNF4P78317 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.58■□□□□ 0.72
RNF4P78317 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
RNF4P78317 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
RNF4P78317 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.58■□□□□ 0.72
RNF4P78317 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
RNF4P78317 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.58■□□□□ 0.72
RNF4P78317 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.58■□□□□ 0.72
RNF4P78317 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RNF4P78317 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF4P78317 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RNF4P78317 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF4P78317 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF4P78317 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.57■□□□□ 0.72
RNF4P78317 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.57■□□□□ 0.72
RNF4P78317 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.57■□□□□ 0.72
RNF4P78317 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.57■□□□□ 0.72
RNF4P78317 KRT18P20-201ENST00000548986 1279 ntBASIC19.57■□□□□ 0.72
RNF4P78317 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.57■□□□□ 0.72
RNF4P78317 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.57■□□□□ 0.72
RNF4P78317 AC008175.2-201ENST00000612840 297 ntBASIC19.57■□□□□ 0.72
RNF4P78317 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.57■□□□□ 0.72
RNF4P78317 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF4P78317 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF4P78317 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.57■□□□□ 0.72
RNF4P78317 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RNF4P78317 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF4P78317 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
RNF4P78317 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
RNF4P78317 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.56■□□□□ 0.72
RNF4P78317 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
RNF4P78317 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.56■□□□□ 0.72
RNF4P78317 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.56■□□□□ 0.72
RNF4P78317 UBE2DNL-204ENST00000602536 740 ntBASIC19.56■□□□□ 0.72
RNF4P78317 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.56■□□□□ 0.72
RNF4P78317 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
RNF4P78317 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF4P78317 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF4P78317 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
RNF4P78317 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF4P78317 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF4P78317 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF4P78317 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF4P78317 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
RNF4P78317 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.55■□□□□ 0.72
RNF4P78317 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF4P78317 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF4P78317 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF4P78317 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.55■□□□□ 0.72
RNF4P78317 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF4P78317 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
RNF4P78317 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.54■□□□□ 0.72
RNF4P78317 POU5F1P4-201ENST00000413175 1085 ntBASIC19.54■□□□□ 0.72
RNF4P78317 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.54■□□□□ 0.72
RNF4P78317 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
RNF4P78317 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.54■□□□□ 0.72
RNF4P78317 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 BID-214ENST00000617586 542 ntTSL 5 BASIC19.54■□□□□ 0.72
RNF4P78317 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
RNF4P78317 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.54■□□□□ 0.72
RNF4P78317 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
RNF4P78317 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF4P78317 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.53■□□□□ 0.72
RNF4P78317 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms