Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.68■□□□□ 0.9
PKNOX1P55347 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PKNOX1P55347 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.68■□□□□ 0.9
PKNOX1P55347 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.68■□□□□ 0.9
PKNOX1P55347 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.68■□□□□ 0.9
PKNOX1P55347 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.68■□□□□ 0.9
PKNOX1P55347 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PKNOX1P55347 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.68■□□□□ 0.9
PKNOX1P55347 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PKNOX1P55347 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX1P55347 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PKNOX1P55347 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX1P55347 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX1P55347 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.67■□□□□ 0.9
PKNOX1P55347 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX1P55347 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.67■□□□□ 0.9
PKNOX1P55347 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PKNOX1P55347 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.67■□□□□ 0.9
PKNOX1P55347 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PKNOX1P55347 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX1P55347 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PKNOX1P55347 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.67■□□□□ 0.9
PKNOX1P55347 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX1P55347 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
PKNOX1P55347 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.66■□□□□ 0.9
PKNOX1P55347 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX1P55347 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.66■□□□□ 0.9
PKNOX1P55347 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.66■□□□□ 0.9
PKNOX1P55347 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.66■□□□□ 0.9
PKNOX1P55347 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.66■□□□□ 0.9
PKNOX1P55347 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX1P55347 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.66■□□□□ 0.9
PKNOX1P55347 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX1P55347 AL121603.2-201ENST00000557373 2117 ntBASIC20.66■□□□□ 0.9
PKNOX1P55347 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX1P55347 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX1P55347 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX1P55347 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PKNOX1P55347 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX1P55347 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.65■□□□□ 0.9
PKNOX1P55347 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.65■□□□□ 0.9
PKNOX1P55347 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX1P55347 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX1P55347 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX1P55347 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX1P55347 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.65■□□□□ 0.9
PKNOX1P55347 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.65■□□□□ 0.9
PKNOX1P55347 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX1P55347 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.65■□□□□ 0.9
PKNOX1P55347 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX1P55347 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX1P55347 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.65■□□□□ 0.9
PKNOX1P55347 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PKNOX1P55347 AC003102.1-202ENST00000563394 1796 ntBASIC20.64■□□□□ 0.9
PKNOX1P55347 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PKNOX1P55347 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX1P55347 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.64■□□□□ 0.89
PKNOX1P55347 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.64■□□□□ 0.89
PKNOX1P55347 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX1P55347 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.64■□□□□ 0.89
PKNOX1P55347 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PKNOX1P55347 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
PKNOX1P55347 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.64■□□□□ 0.89
PKNOX1P55347 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.64■□□□□ 0.89
PKNOX1P55347 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.64■□□□□ 0.89
PKNOX1P55347 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX1P55347 LINC01521-201ENST00000504184 1943 ntBASIC20.64■□□□□ 0.89
PKNOX1P55347 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
PKNOX1P55347 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX1P55347 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
PKNOX1P55347 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
PKNOX1P55347 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.63■□□□□ 0.89
PKNOX1P55347 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.63■□□□□ 0.89
PKNOX1P55347 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PKNOX1P55347 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PKNOX1P55347 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PKNOX1P55347 AL136116.3-201ENST00000402907 1138 ntBASIC20.63■□□□□ 0.89
PKNOX1P55347 BX842568.3-201ENST00000418104 571 ntBASIC20.63■□□□□ 0.89
PKNOX1P55347 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.63■□□□□ 0.89
PKNOX1P55347 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PKNOX1P55347 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.63■□□□□ 0.89
PKNOX1P55347 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.63■□□□□ 0.89
PKNOX1P55347 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.63■□□□□ 0.89
PKNOX1P55347 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
PKNOX1P55347 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PKNOX1P55347 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.63■□□□□ 0.89
PKNOX1P55347 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PKNOX1P55347 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.63■□□□□ 0.89
PKNOX1P55347 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PKNOX1P55347 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.63■□□□□ 0.89
PKNOX1P55347 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.62■□□□□ 0.89
PKNOX1P55347 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PKNOX1P55347 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PKNOX1P55347 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
PKNOX1P55347 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PKNOX1P55347 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PKNOX1P55347 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.62■□□□□ 0.89
PKNOX1P55347 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PKNOX1P55347 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.62■□□□□ 0.89
PKNOX1P55347 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms