Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMK1P53667 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.97■□□□□ 0.95
LIMK1P53667 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
LIMK1P53667 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMK1P53667 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMK1P53667 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMK1P53667 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.97■□□□□ 0.95
LIMK1P53667 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.97■□□□□ 0.95
LIMK1P53667 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMK1P53667 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
LIMK1P53667 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMK1P53667 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMK1P53667 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMK1P53667 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.96■□□□□ 0.95
LIMK1P53667 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMK1P53667 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMK1P53667 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMK1P53667 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMK1P53667 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMK1P53667 ECEL1P3-201ENST00000427961 737 ntBASIC20.96■□□□□ 0.95
LIMK1P53667 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMK1P53667 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMK1P53667 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMK1P53667 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMK1P53667 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
LIMK1P53667 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMK1P53667 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMK1P53667 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMK1P53667 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMK1P53667 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
LIMK1P53667 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMK1P53667 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
LIMK1P53667 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMK1P53667 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.95■□□□□ 0.94
LIMK1P53667 AP003097.1-201ENST00000530657 1135 ntBASIC20.95■□□□□ 0.94
LIMK1P53667 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.95■□□□□ 0.94
LIMK1P53667 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMK1P53667 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMK1P53667 AC010331.1-201ENST00000611423 582 ntBASIC20.95■□□□□ 0.94
LIMK1P53667 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMK1P53667 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMK1P53667 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
LIMK1P53667 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMK1P53667 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.94■□□□□ 0.94
LIMK1P53667 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
LIMK1P53667 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.94■□□□□ 0.94
LIMK1P53667 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMK1P53667 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.94■□□□□ 0.94
LIMK1P53667 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMK1P53667 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMK1P53667 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMK1P53667 MIR4497-201ENST00000583208 89 ntBASIC20.94■□□□□ 0.94
LIMK1P53667 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.94■□□□□ 0.94
LIMK1P53667 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMK1P53667 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.94■□□□□ 0.94
LIMK1P53667 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
LIMK1P53667 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
LIMK1P53667 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMK1P53667 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LIMK1P53667 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMK1P53667 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMK1P53667 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMK1P53667 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.93■□□□□ 0.94
LIMK1P53667 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
LIMK1P53667 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.93■□□□□ 0.94
LIMK1P53667 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMK1P53667 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.93■□□□□ 0.94
LIMK1P53667 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.93■□□□□ 0.94
LIMK1P53667 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIMK1P53667 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIMK1P53667 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMK1P53667 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIMK1P53667 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
LIMK1P53667 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMK1P53667 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMK1P53667 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMK1P53667 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
LIMK1P53667 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMK1P53667 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMK1P53667 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMK1P53667 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMK1P53667 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMK1P53667 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LIMK1P53667 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
LIMK1P53667 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.92■□□□□ 0.94
LIMK1P53667 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.92■□□□□ 0.94
LIMK1P53667 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMK1P53667 AL359736.2-201ENST00000621992 437 ntBASIC20.92■□□□□ 0.94
LIMK1P53667 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMK1P53667 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.92■□□□□ 0.94
LIMK1P53667 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.92■□□□□ 0.94
LIMK1P53667 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMK1P53667 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LIMK1P53667 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMK1P53667 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMK1P53667 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIMK1P53667 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LIMK1P53667 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.91■□□□□ 0.94
LIMK1P53667 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMK1P53667 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms