Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RETP07949 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.36■■□□□ 1.01
RETP07949 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RETP07949 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.36■■□□□ 1.01
RETP07949 AC008694.1-202ENST00000636953 945 ntBASIC21.36■■□□□ 1.01
RETP07949 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RETP07949 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RETP07949 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RETP07949 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
RETP07949 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RETP07949 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
RETP07949 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
RETP07949 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RETP07949 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RETP07949 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RETP07949 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
RETP07949 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.35■■□□□ 1.01
RETP07949 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.35■■□□□ 1.01
RETP07949 AL512625.2-201ENST00000417533 625 ntBASIC21.35■■□□□ 1.01
RETP07949 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
RETP07949 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.35■■□□□ 1.01
RETP07949 AC138907.5-202ENST00000569484 235 ntBASIC21.35■■□□□ 1.01
RETP07949 AC006058.3-201ENST00000606217 1069 ntBASIC21.35■■□□□ 1.01
RETP07949 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.35■■□□□ 1.01
RETP07949 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.35■■□□□ 1.01
RETP07949 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.35■■□□□ 1.01
RETP07949 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RETP07949 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
RETP07949 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RETP07949 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RETP07949 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RETP07949 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.34■■□□□ 1.01
RETP07949 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.34■■□□□ 1.01
RETP07949 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.34■■□□□ 1.01
RETP07949 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
RETP07949 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.34■■□□□ 1.01
RETP07949 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.34■■□□□ 1.01
RETP07949 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.34■■□□□ 1.01
RETP07949 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.34■■□□□ 1.01
RETP07949 AC128676.1-201ENST00000454392 318 ntBASIC21.34■■□□□ 1.01
RETP07949 AC097658.1-201ENST00000475555 843 ntBASIC21.34■■□□□ 1.01
RETP07949 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.34■■□□□ 1.01
RETP07949 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.34■■□□□ 1.01
RETP07949 AC083880.1-201ENST00000608266 535 ntBASIC21.34■■□□□ 1.01
RETP07949 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
RETP07949 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.34■■□□□ 1.01
RETP07949 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
RETP07949 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RETP07949 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RETP07949 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RETP07949 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RETP07949 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
RETP07949 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.33■■□□□ 1.01
RETP07949 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
RETP07949 AC007322.4-201ENST00000509611 723 ntBASIC21.33■■□□□ 1.01
RETP07949 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.33■■□□□ 1.01
RETP07949 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.33■■□□□ 1.01
RETP07949 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.33■■□□□ 1.01
RETP07949 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
RETP07949 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.33■■□□□ 1
RETP07949 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.33■■□□□ 1
RETP07949 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
RETP07949 LINC00565-201ENST00000562710 2331 ntBASIC21.33■■□□□ 1
RETP07949 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RETP07949 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
RETP07949 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RETP07949 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.32■■□□□ 1
RETP07949 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.32■■□□□ 1
RETP07949 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.32■■□□□ 1
RETP07949 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.32■■□□□ 1
RETP07949 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
RETP07949 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.32■■□□□ 1
RETP07949 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.32■■□□□ 1
RETP07949 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.32■■□□□ 1
RETP07949 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.31■■□□□ 1
RETP07949 LINC00526-201ENST00000581067 1875 ntBASIC21.31■■□□□ 1
RETP07949 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RETP07949 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.31■■□□□ 1
RETP07949 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
RETP07949 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.31■■□□□ 1
RETP07949 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.31■■□□□ 1
RETP07949 UNC93B4-201ENST00000505679 747 ntBASIC21.31■■□□□ 1
RETP07949 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.31■■□□□ 1
RETP07949 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.31■■□□□ 1
RETP07949 AC069236.1-201ENST00000604339 616 ntBASIC21.31■■□□□ 1
RETP07949 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.31■■□□□ 1
RETP07949 MYC-209ENST00000641252 345 ntBASIC21.31■■□□□ 1
RETP07949 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RETP07949 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
RETP07949 GUSBP5-202ENST00000510805 1989 ntBASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms