Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.08■□□□□ 0.64
RAF1P04049 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RAF1P04049 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
RAF1P04049 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
RAF1P04049 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.07■□□□□ 0.64
RAF1P04049 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
RAF1P04049 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.07■□□□□ 0.64
RAF1P04049 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.07■□□□□ 0.64
RAF1P04049 DUX4L4-201ENST00000566884 1269 ntBASIC19.07■□□□□ 0.64
RAF1P04049 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.07■□□□□ 0.64
RAF1P04049 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.07■□□□□ 0.64
RAF1P04049 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RAF1P04049 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
RAF1P04049 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RAF1P04049 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RAF1P04049 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RAF1P04049 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
RAF1P04049 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RAF1P04049 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.06■□□□□ 0.64
RAF1P04049 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
RAF1P04049 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RAF1P04049 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.06■□□□□ 0.64
RAF1P04049 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
RAF1P04049 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
RAF1P04049 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RAF1P04049 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RAF1P04049 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.05■□□□□ 0.64
RAF1P04049 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.05■□□□□ 0.64
RAF1P04049 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
RAF1P04049 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.05■□□□□ 0.64
RAF1P04049 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
RAF1P04049 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
RAF1P04049 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
RAF1P04049 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
RAF1P04049 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.05■□□□□ 0.64
RAF1P04049 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.05■□□□□ 0.64
RAF1P04049 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.05■□□□□ 0.64
RAF1P04049 AC080038.1-201ENST00000611274 1154 ntBASIC19.05■□□□□ 0.64
RAF1P04049 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
RAF1P04049 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RAF1P04049 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
RAF1P04049 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RAF1P04049 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
RAF1P04049 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.05■□□□□ 0.64
RAF1P04049 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
RAF1P04049 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RAF1P04049 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
RAF1P04049 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.04■□□□□ 0.64
RAF1P04049 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
RAF1P04049 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RAF1P04049 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RAF1P04049 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RAF1P04049 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.04■□□□□ 0.64
RAF1P04049 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
RAF1P04049 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
RAF1P04049 OR2I1P-207ENST00000453522 948 ntBASIC19.04■□□□□ 0.64
RAF1P04049 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.04■□□□□ 0.64
RAF1P04049 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RAF1P04049 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RAF1P04049 AC244015.2-201ENST00000616358 1861 ntBASIC19.04■□□□□ 0.64
RAF1P04049 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RAF1P04049 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.04■□□□□ 0.64
RAF1P04049 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.04■□□□□ 0.64
RAF1P04049 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RAF1P04049 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RAF1P04049 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.04■□□□□ 0.64
RAF1P04049 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.03■□□□□ 0.64
RAF1P04049 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.03■□□□□ 0.64
RAF1P04049 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
RAF1P04049 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
RAF1P04049 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
RAF1P04049 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 AC016769.1-201ENST00000409132 1010 ntBASIC19.03■□□□□ 0.64
RAF1P04049 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.03■□□□□ 0.64
RAF1P04049 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
RAF1P04049 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAF1P04049 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.02■□□□□ 0.64
RAF1P04049 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RAF1P04049 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RAF1P04049 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 666.7 ms