Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.09■□□□□ 0.81
CPSF4O95639 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4O95639 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.09■□□□□ 0.81
CPSF4O95639 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CPSF4O95639 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.09■□□□□ 0.81
CPSF4O95639 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CPSF4O95639 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CPSF4O95639 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CPSF4O95639 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CPSF4O95639 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CPSF4O95639 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CPSF4O95639 UNC93B3-201ENST00000308076 687 ntBASIC20.08■□□□□ 0.81
CPSF4O95639 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.08■□□□□ 0.81
CPSF4O95639 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.08■□□□□ 0.8
CPSF4O95639 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CPSF4O95639 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.08■□□□□ 0.8
CPSF4O95639 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CPSF4O95639 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.07■□□□□ 0.8
CPSF4O95639 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.07■□□□□ 0.8
CPSF4O95639 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.07■□□□□ 0.8
CPSF4O95639 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CPSF4O95639 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.07■□□□□ 0.8
CPSF4O95639 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CPSF4O95639 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.06■□□□□ 0.8
CPSF4O95639 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.06■□□□□ 0.8
CPSF4O95639 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.06■□□□□ 0.8
CPSF4O95639 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 MIR4767-201ENST00000582827 78 ntBASIC20.06■□□□□ 0.8
CPSF4O95639 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CPSF4O95639 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CPSF4O95639 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
CPSF4O95639 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.05■□□□□ 0.8
CPSF4O95639 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CPSF4O95639 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CPSF4O95639 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CPSF4O95639 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CPSF4O95639 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CPSF4O95639 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.05■□□□□ 0.8
CPSF4O95639 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.05■□□□□ 0.8
CPSF4O95639 BX842568.3-201ENST00000418104 571 ntBASIC20.05■□□□□ 0.8
CPSF4O95639 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.05■□□□□ 0.8
CPSF4O95639 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.05■□□□□ 0.8
CPSF4O95639 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CPSF4O95639 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CPSF4O95639 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.05■□□□□ 0.8
CPSF4O95639 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CPSF4O95639 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CPSF4O95639 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CPSF4O95639 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
CPSF4O95639 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CPSF4O95639 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.04■□□□□ 0.8
CPSF4O95639 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4O95639 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4O95639 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4O95639 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4O95639 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.04■□□□□ 0.8
CPSF4O95639 AC131212.1-201ENST00000613771 668 ntBASIC20.04■□□□□ 0.8
CPSF4O95639 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4O95639 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4O95639 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CPSF4O95639 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.04■□□□□ 0.8
CPSF4O95639 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.04■□□□□ 0.8
CPSF4O95639 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CPSF4O95639 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CPSF4O95639 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CPSF4O95639 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CPSF4O95639 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.03■□□□□ 0.8
CPSF4O95639 AP006587.3-201ENST00000525742 1516 ntBASIC20.03■□□□□ 0.8
CPSF4O95639 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CPSF4O95639 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CPSF4O95639 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CPSF4O95639 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CPSF4O95639 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.03■□□□□ 0.8
CPSF4O95639 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CPSF4O95639 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.03■□□□□ 0.8
CPSF4O95639 AC024257.2-201ENST00000549699 147 ntBASIC20.03■□□□□ 0.8
CPSF4O95639 AC126544.1-201ENST00000580842 1059 ntBASIC20.03■□□□□ 0.8
CPSF4O95639 AL136162.1-201ENST00000607711 1078 ntBASIC20.03■□□□□ 0.8
CPSF4O95639 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CPSF4O95639 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CPSF4O95639 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms