Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SSX4O60224 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
SSX4O60224 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.05■□□□□ 0.64
SSX4O60224 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SSX4O60224 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.05■□□□□ 0.64
SSX4O60224 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SSX4O60224 AC126544.1-201ENST00000580842 1059 ntBASIC19.05■□□□□ 0.64
SSX4O60224 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SSX4O60224 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SSX4O60224 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SSX4O60224 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SSX4O60224 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SSX4O60224 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SSX4O60224 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.05■□□□□ 0.64
SSX4O60224 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.05■□□□□ 0.64
SSX4O60224 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SSX4O60224 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SSX4O60224 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SSX4O60224 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
SSX4O60224 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SSX4O60224 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.04■□□□□ 0.64
SSX4O60224 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.04■□□□□ 0.64
SSX4O60224 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SSX4O60224 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.04■□□□□ 0.64
SSX4O60224 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SSX4O60224 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.04■□□□□ 0.64
SSX4O60224 AL162430.1-201ENST00000480705 870 ntBASIC19.04■□□□□ 0.64
SSX4O60224 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.04■□□□□ 0.64
SSX4O60224 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SSX4O60224 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.04■□□□□ 0.64
SSX4O60224 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 ALDH1A3-203ENST00000557963 1670 ntBASIC19.04■□□□□ 0.64
SSX4O60224 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SSX4O60224 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SSX4O60224 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SSX4O60224 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.03■□□□□ 0.64
SSX4O60224 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SSX4O60224 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.03■□□□□ 0.64
SSX4O60224 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.03■□□□□ 0.64
SSX4O60224 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.03■□□□□ 0.64
SSX4O60224 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
SSX4O60224 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SSX4O60224 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SSX4O60224 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SSX4O60224 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.03■□□□□ 0.64
SSX4O60224 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SSX4O60224 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SSX4O60224 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SSX4O60224 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SSX4O60224 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SSX4O60224 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
SSX4O60224 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SSX4O60224 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SSX4O60224 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SSX4O60224 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SSX4O60224 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SSX4O60224 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.02■□□□□ 0.64
SSX4O60224 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
SSX4O60224 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SSX4O60224 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SSX4O60224 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
SSX4O60224 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SSX4O60224 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SSX4O60224 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SSX4O60224 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
SSX4O60224 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
SSX4O60224 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
SSX4O60224 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.01■□□□□ 0.63
SSX4O60224 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.01■□□□□ 0.63
SSX4O60224 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
SSX4O60224 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.01■□□□□ 0.63
SSX4O60224 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SSX4O60224 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
SSX4O60224 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SSX4O60224 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SSX4O60224 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19■□□□□ 0.63
SSX4O60224 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SSX4O60224 SP2-202ENST00000613139 908 ntTSL 5 BASIC19■□□□□ 0.63
SSX4O60224 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SSX4O60224 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SSX4O60224 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms