Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 GOLGA2P6-201ENST00000340929 2049 ntBASIC17■□□□□ 0.31
HMGB3O15347 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
HMGB3O15347 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB3O15347 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17■□□□□ 0.31
HMGB3O15347 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17■□□□□ 0.31
HMGB3O15347 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB3O15347 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB3O15347 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB3O15347 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB3O15347 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17■□□□□ 0.31
HMGB3O15347 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB3O15347 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB3O15347 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
HMGB3O15347 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 LINC01006-201ENST00000333319 2292 ntBASIC16.99■□□□□ 0.31
HMGB3O15347 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
HMGB3O15347 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
HMGB3O15347 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
HMGB3O15347 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB3O15347 HYI-213ENST00000583037 1322 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB3O15347 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
HMGB3O15347 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
HMGB3O15347 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGB3O15347 AC120024.1-201ENST00000562672 995 ntBASIC16.98■□□□□ 0.31
HMGB3O15347 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
HMGB3O15347 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB3O15347 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB3O15347 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
HMGB3O15347 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HMGB3O15347 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.97■□□□□ 0.31
HMGB3O15347 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HMGB3O15347 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB3O15347 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
HMGB3O15347 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB3O15347 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB3O15347 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 LINC01529-204ENST00000636474 1715 ntBASIC16.96■□□□□ 0.31
HMGB3O15347 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC16.96■□□□□ 0.31
HMGB3O15347 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HMGB3O15347 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGB3O15347 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGB3O15347 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGB3O15347 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HMGB3O15347 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGB3O15347 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
HMGB3O15347 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HMGB3O15347 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HMGB3O15347 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB3O15347 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms