Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SDCBPO00560 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDCBPO00560 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDCBPO00560 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.93■□□□□ 0.46
SDCBPO00560 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SDCBPO00560 OR2I1P-207ENST00000453522 948 ntBASIC17.93■□□□□ 0.46
SDCBPO00560 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC17.93■□□□□ 0.46
SDCBPO00560 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC17.93■□□□□ 0.46
SDCBPO00560 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.93■□□□□ 0.46
SDCBPO00560 AL031602.1-201ENST00000633169 911 ntBASIC17.93■□□□□ 0.46
SDCBPO00560 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDCBPO00560 LINC01521-201ENST00000504184 1943 ntBASIC17.93■□□□□ 0.46
SDCBPO00560 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SDCBPO00560 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.93■□□□□ 0.46
SDCBPO00560 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDCBPO00560 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SDCBPO00560 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.92■□□□□ 0.46
SDCBPO00560 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDCBPO00560 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDCBPO00560 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDCBPO00560 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SDCBPO00560 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDCBPO00560 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.92■□□□□ 0.46
SDCBPO00560 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC17.92■□□□□ 0.46
SDCBPO00560 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SDCBPO00560 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.92■□□□□ 0.46
SDCBPO00560 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
SDCBPO00560 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDCBPO00560 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.92■□□□□ 0.46
SDCBPO00560 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDCBPO00560 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
SDCBPO00560 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
SDCBPO00560 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
SDCBPO00560 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.91■□□□□ 0.46
SDCBPO00560 OR7E47P-201ENST00000546390 1422 ntBASIC17.91■□□□□ 0.46
SDCBPO00560 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.91■□□□□ 0.46
SDCBPO00560 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
SDCBPO00560 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SDCBPO00560 AC087239.1-201ENST00000622671 572 ntBASIC17.91■□□□□ 0.46
SDCBPO00560 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.91■□□□□ 0.46
SDCBPO00560 AC068587.7-201ENST00000641602 218 ntBASIC17.91■□□□□ 0.46
SDCBPO00560 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.91■□□□□ 0.46
SDCBPO00560 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SDCBPO00560 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.91■□□□□ 0.46
SDCBPO00560 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.91■□□□□ 0.46
SDCBPO00560 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SDCBPO00560 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.91■□□□□ 0.46
SDCBPO00560 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDCBPO00560 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SDCBPO00560 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDCBPO00560 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDCBPO00560 LINC01006-201ENST00000333319 2292 ntBASIC17.9■□□□□ 0.46
SDCBPO00560 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.9■□□□□ 0.46
SDCBPO00560 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.9■□□□□ 0.46
SDCBPO00560 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDCBPO00560 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.9■□□□□ 0.46
SDCBPO00560 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDCBPO00560 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC17.9■□□□□ 0.46
SDCBPO00560 AC011298.3-201ENST00000615796 283 ntBASIC17.9■□□□□ 0.46
SDCBPO00560 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDCBPO00560 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDCBPO00560 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.9■□□□□ 0.46
SDCBPO00560 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDCBPO00560 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDCBPO00560 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.9■□□□□ 0.46
SDCBPO00560 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDCBPO00560 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDCBPO00560 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SDCBPO00560 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.89■□□□□ 0.45
SDCBPO00560 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.89■□□□□ 0.45
SDCBPO00560 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDCBPO00560 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDCBPO00560 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.89■□□□□ 0.45
SDCBPO00560 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SDCBPO00560 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SDCBPO00560 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SDCBPO00560 AC136469.2-201ENST00000623944 1028 ntBASIC17.89■□□□□ 0.45
SDCBPO00560 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDCBPO00560 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.89■□□□□ 0.45
SDCBPO00560 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SDCBPO00560 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC17.89■□□□□ 0.45
SDCBPO00560 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
SDCBPO00560 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDCBPO00560 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SDCBPO00560 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDCBPO00560 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDCBPO00560 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDCBPO00560 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDCBPO00560 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDCBPO00560 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms