Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A5A8TX70 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.67■□□□□ 0.26
COL6A5A8TX70 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
COL6A5A8TX70 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC16.67■□□□□ 0.26
COL6A5A8TX70 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A5A8TX70 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL6A5A8TX70 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A5A8TX70 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A5A8TX70 AL355472.2-201ENST00000422958 438 ntBASIC16.67■□□□□ 0.26
COL6A5A8TX70 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A5A8TX70 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A5A8TX70 EEF1DP3-203ENST00000566025 782 ntBASIC16.67■□□□□ 0.26
COL6A5A8TX70 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A5A8TX70 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A5A8TX70 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A5A8TX70 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A5A8TX70 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 RARRES2P10-201ENST00000564312 460 ntBASIC16.66■□□□□ 0.26
COL6A5A8TX70 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.66■□□□□ 0.26
COL6A5A8TX70 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 KRT16P2-201ENST00000414673 1423 ntBASIC16.66■□□□□ 0.26
COL6A5A8TX70 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
COL6A5A8TX70 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A5A8TX70 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A5A8TX70 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A5A8TX70 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A5A8TX70 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A5A8TX70 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A5A8TX70 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A5A8TX70 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A5A8TX70 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A5A8TX70 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
COL6A5A8TX70 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A5A8TX70 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A5A8TX70 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A5A8TX70 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A5A8TX70 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A5A8TX70 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A5A8TX70 OR2A1-AS1-207ENST00000486094 819 ntBASIC16.65■□□□□ 0.26
COL6A5A8TX70 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A5A8TX70 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.64■□□□□ 0.25
COL6A5A8TX70 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A5A8TX70 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL6A5A8TX70 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A5A8TX70 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A5A8TX70 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A5A8TX70 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A5A8TX70 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A5A8TX70 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
COL6A5A8TX70 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A5A8TX70 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC16.64■□□□□ 0.25
COL6A5A8TX70 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
COL6A5A8TX70 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.64■□□□□ 0.25
COL6A5A8TX70 AC239809.2-201ENST00000415381 517 ntBASIC16.64■□□□□ 0.25
COL6A5A8TX70 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A5A8TX70 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.64■□□□□ 0.25
COL6A5A8TX70 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A5A8TX70 MIR6786-201ENST00000616843 113 ntBASIC16.64■□□□□ 0.25
COL6A5A8TX70 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A5A8TX70 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A5A8TX70 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A5A8TX70 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A5A8TX70 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A5A8TX70 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A5A8TX70 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC16.63■□□□□ 0.25
COL6A5A8TX70 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A5A8TX70 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.63■□□□□ 0.25
COL6A5A8TX70 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A5A8TX70 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A5A8TX70 PBX1-209ENST00000485769 834 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A5A8TX70 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A5A8TX70 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.63■□□□□ 0.25
COL6A5A8TX70 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A5A8TX70 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.63■□□□□ 0.25
COL6A5A8TX70 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A5A8TX70 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A5A8TX70 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A5A8TX70 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A5A8TX70 AC092368.3-202ENST00000574180 1591 ntBASIC16.62■□□□□ 0.25
COL6A5A8TX70 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
COL6A5A8TX70 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL6A5A8TX70 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms