Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 AC135279.3-201ENST00000610945 1311 ntBASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 AC126544.1-201ENST00000580842 1059 ntBASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.53■■□□□ 1.04
TCRBV7S3A2A0A539 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
TCRBV7S3A2A0A539 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TCRBV7S3A2A0A539 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TCRBV7S3A2A0A539 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.03
TCRBV7S3A2A0A539 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 SLC25A24-204ENST00000569674 2357 ntBASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 IGHV3-19-201ENST00000521488 291 ntBASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 AC008764.7-201ENST00000593779 1081 ntBASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.51■■□□□ 1.03
TCRBV7S3A2A0A539 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TCRBV7S3A2A0A539 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 AC096631.2-201ENST00000436136 790 ntBASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.49■■□□□ 1.03
TCRBV7S3A2A0A539 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 AC099791.1-201ENST00000416440 715 ntBASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.48■■□□□ 1.03
TCRBV7S3A2A0A539 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TCRBV7S3A2A0A539 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TCRBV7S3A2A0A539 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TCRBV7S3A2A0A539 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
TCRBV7S3A2A0A539 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.47■■□□□ 1.03
TCRBV7S3A2A0A539 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms