Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TRAV41A0A0B4J266 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 AC004854.2-201ENST00000608450 1441 ntBASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 ME2-206ENST00000638410 2289 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 ME2-210ENST00000639255 2262 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 KRT18P5-201ENST00000436075 1291 ntBASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 AL162430.1-201ENST00000480705 870 ntBASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 AC053503.5-201ENST00000601508 636 ntBASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 AP004607.4-201ENST00000530158 1459 ntBASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV41A0A0B4J266 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TRAV41A0A0B4J266 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 FBXW4P1-201ENST00000426721 2239 ntBASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 KRT19P1-201ENST00000405746 1186 ntBASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 SERP1-208ENST00000491660 830 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 EEF1DP3-203ENST00000566025 782 ntBASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 AC104187.1-201ENST00000607510 612 ntBASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAV41A0A0B4J266 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 GXYLT1P2-201ENST00000433312 1230 ntBASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV41A0A0B4J266 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAV41A0A0B4J266 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms