Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
USH1CQ9Y6N9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USH1CQ9Y6N9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 AC026471.6-201ENST00000622954 1905 ntBASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.04■□□□□ 0.96
USH1CQ9Y6N9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 AC021242.3-201ENST00000607598 1377 ntBASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 KRT8P33-201ENST00000508125 1423 ntBASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.03■□□□□ 0.96
USH1CQ9Y6N9 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 YBX1P4-201ENST00000392794 808 ntBASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.02■□□□□ 0.96
USH1CQ9Y6N9 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
USH1CQ9Y6N9 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.02■□□□□ 0.95
USH1CQ9Y6N9 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 GABARAPL3-202ENST00000624044 1851 ntBASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 C17orf82-201ENST00000623772 1530 ntBASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
USH1CQ9Y6N9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21■□□□□ 0.95
USH1CQ9Y6N9 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21■□□□□ 0.95
USH1CQ9Y6N9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
USH1CQ9Y6N9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21■□□□□ 0.95
USH1CQ9Y6N9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21■□□□□ 0.95
USH1CQ9Y6N9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
USH1CQ9Y6N9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
USH1CQ9Y6N9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21■□□□□ 0.95
USH1CQ9Y6N9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21■□□□□ 0.95
USH1CQ9Y6N9 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21■□□□□ 0.95
USH1CQ9Y6N9 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21■□□□□ 0.95
USH1CQ9Y6N9 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USH1CQ9Y6N9 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USH1CQ9Y6N9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USH1CQ9Y6N9 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USH1CQ9Y6N9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USH1CQ9Y6N9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21■□□□□ 0.95
USH1CQ9Y6N9 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USH1CQ9Y6N9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms