Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 AC016769.1-201ENST00000409132 1010 ntBASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 RAP2CP1-201ENST00000605103 478 ntBASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
PCDHGA4Q9Y5G9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 AC079089.2-201ENST00000531211 1277 ntBASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 AC137761.2-201ENST00000561729 223 ntBASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 AC145350.3-201ENST00000569033 163 ntBASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 KRT18P61-201ENST00000585825 1298 ntBASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA4Q9Y5G9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 AC073111.5-205ENST00000641717 521 ntBASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA4Q9Y5G9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 CDCA4P2-201ENST00000441182 718 ntBASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA4Q9Y5G9 AC080038.3-201ENST00000623346 1952 ntBASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA4Q9Y5G9 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
PCDHGA4Q9Y5G9 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.76■□□□□ 0.91
PCDHGA4Q9Y5G9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
PCDHGA4Q9Y5G9 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.76■□□□□ 0.91
PCDHGA4Q9Y5G9 AC139530.1-201ENST00000575312 1977 ntBASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 213.3 ms