Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
USE1Q9NZ43 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.67■□□□□ 0.74
USE1Q9NZ43 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 AL031602.1-201ENST00000633169 911 ntBASIC19.67■□□□□ 0.74
USE1Q9NZ43 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.67■□□□□ 0.74
USE1Q9NZ43 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.67■□□□□ 0.74
USE1Q9NZ43 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USE1Q9NZ43 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USE1Q9NZ43 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USE1Q9NZ43 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USE1Q9NZ43 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USE1Q9NZ43 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
USE1Q9NZ43 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USE1Q9NZ43 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.66■□□□□ 0.74
USE1Q9NZ43 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USE1Q9NZ43 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
USE1Q9NZ43 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USE1Q9NZ43 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USE1Q9NZ43 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.66■□□□□ 0.74
USE1Q9NZ43 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USE1Q9NZ43 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USE1Q9NZ43 AC009102.2-201ENST00000606772 1639 ntBASIC19.65■□□□□ 0.74
USE1Q9NZ43 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USE1Q9NZ43 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.65■□□□□ 0.74
USE1Q9NZ43 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
USE1Q9NZ43 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
USE1Q9NZ43 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.65■□□□□ 0.74
USE1Q9NZ43 AL499627.2-201ENST00000606283 725 ntBASIC19.65■□□□□ 0.74
USE1Q9NZ43 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USE1Q9NZ43 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
USE1Q9NZ43 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.65■□□□□ 0.74
USE1Q9NZ43 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.65■□□□□ 0.74
USE1Q9NZ43 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USE1Q9NZ43 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
USE1Q9NZ43 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USE1Q9NZ43 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
USE1Q9NZ43 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.64■□□□□ 0.74
USE1Q9NZ43 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USE1Q9NZ43 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
USE1Q9NZ43 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USE1Q9NZ43 AC137630.3-201ENST00000607245 391 ntBASIC19.64■□□□□ 0.73
USE1Q9NZ43 OR7E47P-201ENST00000546390 1422 ntBASIC19.64■□□□□ 0.73
USE1Q9NZ43 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.64■□□□□ 0.73
USE1Q9NZ43 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USE1Q9NZ43 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
USE1Q9NZ43 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USE1Q9NZ43 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
USE1Q9NZ43 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
USE1Q9NZ43 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USE1Q9NZ43 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
USE1Q9NZ43 AP005212.1-201ENST00000581547 1997 ntBASIC19.64■□□□□ 0.73
USE1Q9NZ43 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USE1Q9NZ43 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USE1Q9NZ43 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
USE1Q9NZ43 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.63■□□□□ 0.73
USE1Q9NZ43 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USE1Q9NZ43 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USE1Q9NZ43 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USE1Q9NZ43 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.63■□□□□ 0.73
USE1Q9NZ43 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
USE1Q9NZ43 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USE1Q9NZ43 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USE1Q9NZ43 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USE1Q9NZ43 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.62■□□□□ 0.73
USE1Q9NZ43 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USE1Q9NZ43 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USE1Q9NZ43 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USE1Q9NZ43 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USE1Q9NZ43 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USE1Q9NZ43 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.62■□□□□ 0.73
USE1Q9NZ43 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.62■□□□□ 0.73
USE1Q9NZ43 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
USE1Q9NZ43 AL033527.3-201ENST00000566366 1196 ntBASIC19.62■□□□□ 0.73
USE1Q9NZ43 MIR4508-201ENST00000584178 70 ntBASIC19.62■□□□□ 0.73
USE1Q9NZ43 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.62■□□□□ 0.73
USE1Q9NZ43 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USE1Q9NZ43 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
USE1Q9NZ43 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
USE1Q9NZ43 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
USE1Q9NZ43 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USE1Q9NZ43 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
USE1Q9NZ43 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
USE1Q9NZ43 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USE1Q9NZ43 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.61■□□□□ 0.73
USE1Q9NZ43 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USE1Q9NZ43 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USE1Q9NZ43 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
USE1Q9NZ43 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USE1Q9NZ43 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.61■□□□□ 0.73
USE1Q9NZ43 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms