Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM39Q9HCM9 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
TRIM39Q9HCM9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
TRIM39Q9HCM9 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM39Q9HCM9 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
TRIM39Q9HCM9 AC003102.1-202ENST00000563394 1796 ntBASIC21.02■□□□□ 0.96
TRIM39Q9HCM9 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM39Q9HCM9 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM39Q9HCM9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 AC104187.1-201ENST00000607510 612 ntBASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 EP400NL-214ENST00000641289 2402 ntBASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM39Q9HCM9 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM39Q9HCM9 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM39Q9HCM9 AC026471.6-201ENST00000622954 1905 ntBASIC21■□□□□ 0.95
TRIM39Q9HCM9 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM39Q9HCM9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM39Q9HCM9 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM39Q9HCM9 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21■□□□□ 0.95
TRIM39Q9HCM9 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21■□□□□ 0.95
TRIM39Q9HCM9 EEF1DP3-203ENST00000566025 782 ntBASIC21■□□□□ 0.95
TRIM39Q9HCM9 AC053503.5-201ENST00000601508 636 ntBASIC21■□□□□ 0.95
TRIM39Q9HCM9 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21■□□□□ 0.95
TRIM39Q9HCM9 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM39Q9HCM9 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM39Q9HCM9 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM39Q9HCM9 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM39Q9HCM9 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 AC138907.5-202ENST00000569484 235 ntBASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM39Q9HCM9 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 AC010542.4-201ENST00000563151 1910 ntBASIC20.96■□□□□ 0.95
TRIM39Q9HCM9 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
TRIM39Q9HCM9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms