Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SENP3Q9H4L4 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SENP3Q9H4L4 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC30.91■■■□□ 2.54
SENP3Q9H4L4 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC30.9■■■□□ 2.54
SENP3Q9H4L4 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC30.9■■■□□ 2.54
SENP3Q9H4L4 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SENP3Q9H4L4 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SENP3Q9H4L4 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SENP3Q9H4L4 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SENP3Q9H4L4 SEPHS1P7-201ENST00000452995 1177 ntBASIC30.9■■■□□ 2.54
SENP3Q9H4L4 MAX-217ENST00000557277 728 ntTSL 3 BASIC30.9■■■□□ 2.54
SENP3Q9H4L4 AC097520.1-201ENST00000624435 385 ntBASIC30.9■■■□□ 2.54
SENP3Q9H4L4 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC30.9■■■□□ 2.54
SENP3Q9H4L4 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SENP3Q9H4L4 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SENP3Q9H4L4 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC30.89■■■□□ 2.54
SENP3Q9H4L4 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC30.89■■■□□ 2.54
SENP3Q9H4L4 RPS2P4-201ENST00000476944 856 ntBASIC30.89■■■□□ 2.54
SENP3Q9H4L4 AC087762.1-201ENST00000559755 643 ntTSL 3 BASIC30.89■■■□□ 2.54
SENP3Q9H4L4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC30.89■■■□□ 2.54
SENP3Q9H4L4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC30.89■■■□□ 2.54
SENP3Q9H4L4 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
SENP3Q9H4L4 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 RPS26-201ENST00000356464 1183 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 YY1P1-201ENST00000427625 668 ntBASIC30.88■■■□□ 2.53
SENP3Q9H4L4 PAICSP2-201ENST00000429118 1150 ntBASIC30.88■■■□□ 2.53
SENP3Q9H4L4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 AC092905.1-201ENST00000467527 949 ntBASIC30.88■■■□□ 2.53
SENP3Q9H4L4 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 OSTCP1-202ENST00000522287 1195 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3Q9H4L4 AC055733.4-201ENST00000638462 1354 ntBASIC30.88■■■□□ 2.53
SENP3Q9H4L4 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
SENP3Q9H4L4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC30.87■■■□□ 2.53
SENP3Q9H4L4 AC073310.1-201ENST00000423226 1033 ntBASIC30.87■■■□□ 2.53
SENP3Q9H4L4 AC093787.1-201ENST00000450396 207 ntBASIC30.87■■■□□ 2.53
SENP3Q9H4L4 AC022087.1-201ENST00000558372 612 ntTSL 3 BASIC30.87■■■□□ 2.53
SENP3Q9H4L4 AC110792.4-201ENST00000609843 298 ntBASIC30.87■■■□□ 2.53
SENP3Q9H4L4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC30.87■■■□□ 2.53
SENP3Q9H4L4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SENP3Q9H4L4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
SENP3Q9H4L4 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC30.87■■■□□ 2.53
SENP3Q9H4L4 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC30.87■■■□□ 2.53
SENP3Q9H4L4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SENP3Q9H4L4 MIPEPP3-201ENST00000412105 444 ntBASIC30.86■■■□□ 2.53
SENP3Q9H4L4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SENP3Q9H4L4 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC30.86■■■□□ 2.53
SENP3Q9H4L4 SLC7A5P1-201ENST00000568957 537 ntBASIC30.86■■■□□ 2.53
SENP3Q9H4L4 AL157392.4-201ENST00000609756 345 ntBASIC30.86■■■□□ 2.53
SENP3Q9H4L4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC30.86■■■□□ 2.53
SENP3Q9H4L4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
SENP3Q9H4L4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 AC133552.2-202ENST00000575694 574 ntBASIC30.85■■■□□ 2.53
SENP3Q9H4L4 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC30.85■■■□□ 2.53
SENP3Q9H4L4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC30.84■■■□□ 2.53
SENP3Q9H4L4 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
SENP3Q9H4L4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC30.84■■■□□ 2.53
SENP3Q9H4L4 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SENP3Q9H4L4 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 CYP2T1P-201ENST00000432607 1285 ntBASIC30.83■■■□□ 2.53
SENP3Q9H4L4 AC098483.1-201ENST00000438623 955 ntTSL 5 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 AL049829.1-201ENST00000465411 156 ntBASIC30.83■■■□□ 2.53
SENP3Q9H4L4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 HMGB1P8-201ENST00000558211 949 ntBASIC30.83■■■□□ 2.53
SENP3Q9H4L4 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SENP3Q9H4L4 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC30.82■■■□□ 2.53
SENP3Q9H4L4 AL139125.2-201ENST00000623134 1869 ntBASIC30.82■■■□□ 2.53
SENP3Q9H4L4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SENP3Q9H4L4 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC30.82■■■□□ 2.52
SENP3Q9H4L4 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC30.82■■■□□ 2.52
SENP3Q9H4L4 ECEL1P3-201ENST00000427961 737 ntBASIC30.82■■■□□ 2.52
SENP3Q9H4L4 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC30.82■■■□□ 2.52
SENP3Q9H4L4 AL158050.2-201ENST00000605336 568 ntBASIC30.82■■■□□ 2.52
SENP3Q9H4L4 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC30.82■■■□□ 2.52
SENP3Q9H4L4 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
SENP3Q9H4L4 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms