Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX3-1Q99801 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX3-1Q99801 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX3-1Q99801 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX3-1Q99801 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX3-1Q99801 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
NKX3-1Q99801 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX3-1Q99801 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX3-1Q99801 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX3-1Q99801 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.43■□□□□ 0.54
NKX3-1Q99801 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.43■□□□□ 0.54
NKX3-1Q99801 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NKX3-1Q99801 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.43■□□□□ 0.54
NKX3-1Q99801 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX3-1Q99801 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX3-1Q99801 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX3-1Q99801 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
NKX3-1Q99801 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX3-1Q99801 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.43■□□□□ 0.54
NKX3-1Q99801 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
NKX3-1Q99801 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.43■□□□□ 0.54
NKX3-1Q99801 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX3-1Q99801 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX3-1Q99801 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
NKX3-1Q99801 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.43■□□□□ 0.54
NKX3-1Q99801 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.42■□□□□ 0.54
NKX3-1Q99801 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX3-1Q99801 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX3-1Q99801 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX3-1Q99801 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX3-1Q99801 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX3-1Q99801 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.42■□□□□ 0.54
NKX3-1Q99801 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX3-1Q99801 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.42■□□□□ 0.54
NKX3-1Q99801 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.42■□□□□ 0.54
NKX3-1Q99801 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.42■□□□□ 0.54
NKX3-1Q99801 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.42■□□□□ 0.54
NKX3-1Q99801 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX3-1Q99801 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX3-1Q99801 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
NKX3-1Q99801 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX3-1Q99801 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX3-1Q99801 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX3-1Q99801 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX3-1Q99801 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.41■□□□□ 0.54
NKX3-1Q99801 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NKX3-1Q99801 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX3-1Q99801 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX3-1Q99801 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.41■□□□□ 0.54
NKX3-1Q99801 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18.41■□□□□ 0.54
NKX3-1Q99801 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NKX3-1Q99801 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
NKX3-1Q99801 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.41■□□□□ 0.54
NKX3-1Q99801 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
NKX3-1Q99801 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX3-1Q99801 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX3-1Q99801 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
NKX3-1Q99801 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
NKX3-1Q99801 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.4■□□□□ 0.54
NKX3-1Q99801 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
NKX3-1Q99801 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.4■□□□□ 0.54
NKX3-1Q99801 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
NKX3-1Q99801 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.4■□□□□ 0.54
NKX3-1Q99801 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX3-1Q99801 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.4■□□□□ 0.54
NKX3-1Q99801 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.39■□□□□ 0.54
NKX3-1Q99801 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX3-1Q99801 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX3-1Q99801 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX3-1Q99801 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.39■□□□□ 0.53
NKX3-1Q99801 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.39■□□□□ 0.53
NKX3-1Q99801 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.39■□□□□ 0.53
NKX3-1Q99801 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX3-1Q99801 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX3-1Q99801 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX3-1Q99801 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX3-1Q99801 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX3-1Q99801 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX3-1Q99801 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.38■□□□□ 0.53
NKX3-1Q99801 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.38■□□□□ 0.53
NKX3-1Q99801 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NKX3-1Q99801 LINC01006-201ENST00000333319 2292 ntBASIC18.38■□□□□ 0.53
NKX3-1Q99801 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.38■□□□□ 0.53
NKX3-1Q99801 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 328.6 ms