Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
VPS35Q96QK1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
VPS35Q96QK1 EP400NL-214ENST00000641289 2402 ntBASIC21.06■□□□□ 0.96
VPS35Q96QK1 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.05■□□□□ 0.96
VPS35Q96QK1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS35Q96QK1 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS35Q96QK1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
VPS35Q96QK1 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS35Q96QK1 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS35Q96QK1 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS35Q96QK1 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS35Q96QK1 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.05■□□□□ 0.96
VPS35Q96QK1 AC053503.5-201ENST00000601508 636 ntBASIC21.05■□□□□ 0.96
VPS35Q96QK1 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS35Q96QK1 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
VPS35Q96QK1 AC010542.4-201ENST00000563151 1910 ntBASIC21.04■□□□□ 0.96
VPS35Q96QK1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS35Q96QK1 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.04■□□□□ 0.96
VPS35Q96QK1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS35Q96QK1 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS35Q96QK1 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS35Q96QK1 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS35Q96QK1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
VPS35Q96QK1 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS35Q96QK1 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.04■□□□□ 0.96
VPS35Q96QK1 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS35Q96QK1 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS35Q96QK1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
VPS35Q96QK1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS35Q96QK1 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS35Q96QK1 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VPS35Q96QK1 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS35Q96QK1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS35Q96QK1 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS35Q96QK1 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
VPS35Q96QK1 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VPS35Q96QK1 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
VPS35Q96QK1 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
VPS35Q96QK1 KRT19P1-201ENST00000405746 1186 ntBASIC21.03■□□□□ 0.96
VPS35Q96QK1 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.03■□□□□ 0.96
VPS35Q96QK1 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS35Q96QK1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS35Q96QK1 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS35Q96QK1 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS35Q96QK1 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VPS35Q96QK1 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
VPS35Q96QK1 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS35Q96QK1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
VPS35Q96QK1 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS35Q96QK1 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
VPS35Q96QK1 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS35Q96QK1 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS35Q96QK1 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS35Q96QK1 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS35Q96QK1 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.02■□□□□ 0.96
VPS35Q96QK1 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS35Q96QK1 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS35Q96QK1 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS35Q96QK1 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS35Q96QK1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS35Q96QK1 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS35Q96QK1 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
VPS35Q96QK1 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS35Q96QK1 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.02■□□□□ 0.95
VPS35Q96QK1 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.02■□□□□ 0.95
VPS35Q96QK1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.02■□□□□ 0.95
VPS35Q96QK1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS35Q96QK1 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS35Q96QK1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
VPS35Q96QK1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS35Q96QK1 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS35Q96QK1 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
VPS35Q96QK1 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS35Q96QK1 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS35Q96QK1 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
VPS35Q96QK1 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS35Q96QK1 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS35Q96QK1 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.01■□□□□ 0.95
VPS35Q96QK1 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.01■□□□□ 0.95
VPS35Q96QK1 AC104564.3-201ENST00000582367 638 ntBASIC21.01■□□□□ 0.95
VPS35Q96QK1 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
VPS35Q96QK1 AC104187.1-201ENST00000607510 612 ntBASIC21.01■□□□□ 0.95
VPS35Q96QK1 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
VPS35Q96QK1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS35Q96QK1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS35Q96QK1 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS35Q96QK1 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS35Q96QK1 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS35Q96QK1 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS35Q96QK1 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS35Q96QK1 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
VPS35Q96QK1 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21■□□□□ 0.95
VPS35Q96QK1 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21■□□□□ 0.95
VPS35Q96QK1 AC138907.5-202ENST00000569484 235 ntBASIC21■□□□□ 0.95
VPS35Q96QK1 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21■□□□□ 0.95
VPS35Q96QK1 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VPS35Q96QK1 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
VPS35Q96QK1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS35Q96QK1 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS35Q96QK1 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms