Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 AC024257.2-201ENST00000549699 147 ntBASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.31■□□□□ 0.84
CLHC1Q8NHS4 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 AL136162.1-201ENST00000607711 1078 ntBASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLHC1Q8NHS4 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.29■□□□□ 0.84
CLHC1Q8NHS4 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 BX842568.3-201ENST00000418104 571 ntBASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLHC1Q8NHS4 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CLHC1Q8NHS4 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CLHC1Q8NHS4 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CLHC1Q8NHS4 AP006587.3-201ENST00000525742 1516 ntBASIC20.27■□□□□ 0.83
CLHC1Q8NHS4 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CLHC1Q8NHS4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 AC126544.1-201ENST00000580842 1059 ntBASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 SMUG1P1-201ENST00000590640 811 ntBASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLHC1Q8NHS4 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms