Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 OR10C1-204ENST00000622521 1039 ntBASIC28.15■■■□□ 2.1
USHBP1Q8N6Y0 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USHBP1Q8N6Y0 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USHBP1Q8N6Y0 AC061975.6-201ENST00000579045 1553 ntBASIC28.15■■■□□ 2.1
USHBP1Q8N6Y0 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
USHBP1Q8N6Y0 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
USHBP1Q8N6Y0 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC28.14■■■□□ 2.1
USHBP1Q8N6Y0 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
USHBP1Q8N6Y0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC28.14■■■□□ 2.1
USHBP1Q8N6Y0 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC28.14■■■□□ 2.1
USHBP1Q8N6Y0 AC008175.2-201ENST00000612840 297 ntBASIC28.14■■■□□ 2.1
USHBP1Q8N6Y0 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
USHBP1Q8N6Y0 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC28.14■■■□□ 2.1
USHBP1Q8N6Y0 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
USHBP1Q8N6Y0 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
USHBP1Q8N6Y0 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
USHBP1Q8N6Y0 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.09
USHBP1Q8N6Y0 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USHBP1Q8N6Y0 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
USHBP1Q8N6Y0 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
USHBP1Q8N6Y0 BX276092.2-201ENST00000417668 665 ntBASIC28.13■■■□□ 2.09
USHBP1Q8N6Y0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC28.13■■■□□ 2.09
USHBP1Q8N6Y0 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
USHBP1Q8N6Y0 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC28.13■■■□□ 2.09
USHBP1Q8N6Y0 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC28.12■■■□□ 2.09
USHBP1Q8N6Y0 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
USHBP1Q8N6Y0 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USHBP1Q8N6Y0 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USHBP1Q8N6Y0 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC28.12■■■□□ 2.09
USHBP1Q8N6Y0 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
USHBP1Q8N6Y0 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
USHBP1Q8N6Y0 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
USHBP1Q8N6Y0 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC28.12■■■□□ 2.09
USHBP1Q8N6Y0 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC28.12■■■□□ 2.09
USHBP1Q8N6Y0 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 POU5F1P3-201ENST00000428824 1078 ntBASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 AC083880.1-201ENST00000608266 535 ntBASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 RARG-204ENST00000543726 1779 ntTSL 2 BASIC28.11■■■□□ 2.09
USHBP1Q8N6Y0 RBM17P2-201ENST00000616397 1405 ntBASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 AC069236.1-201ENST00000604339 616 ntBASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 AC092118.2-201ENST00000613495 667 ntBASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 AC008694.1-202ENST00000636953 945 ntBASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
USHBP1Q8N6Y0 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 AC120498.10-201ENST00000621827 505 ntBASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 AC003102.1-202ENST00000563394 1796 ntBASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 PKM-204ENST00000449901 2526 ntTSL 2 BASIC28.09■■■□□ 2.09
USHBP1Q8N6Y0 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC28.08■■■□□ 2.09
USHBP1Q8N6Y0 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC28.08■■■□□ 2.09
USHBP1Q8N6Y0 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC28.08■■■□□ 2.09
USHBP1Q8N6Y0 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC28.08■■■□□ 2.09
USHBP1Q8N6Y0 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC28.08■■■□□ 2.09
USHBP1Q8N6Y0 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
USHBP1Q8N6Y0 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC28.08■■■□□ 2.09
USHBP1Q8N6Y0 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
USHBP1Q8N6Y0 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 POU5F1P4-201ENST00000413175 1085 ntBASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 AL512625.2-201ENST00000417533 625 ntBASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
USHBP1Q8N6Y0 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC28.06■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms