Protein–RNA interactions for Protein: Q8N1V8

LINC01561, Uncharacterized protein encoded by LINC01561, humanhuman

Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01561Q8N1V8 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC01561Q8N1V8 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
LINC01561Q8N1V8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LINC01561Q8N1V8 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
LINC01561Q8N1V8 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
LINC01561Q8N1V8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
LINC01561Q8N1V8 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC14.21□□□□□ -0.14
LINC01561Q8N1V8 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 AP004607.7-201ENST00000527152 1677 ntBASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 CREM-229ENST00000474362 1030 ntTSL 2 BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC01561Q8N1V8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 KRT16P3-201ENST00000439127 1283 ntBASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 SRD5A1P1-201ENST00000442297 786 ntBASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 AC003102.1-202ENST00000563394 1796 ntBASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC01561Q8N1V8 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 DUX4L19-201ENST00000557448 1267 ntBASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC14.18□□□□□ -0.14
LINC01561Q8N1V8 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 MIR3621-201ENST00000580529 85 ntBASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LINC01561Q8N1V8 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms