Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
C9orf40Q8IXQ3 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
C9orf40Q8IXQ3 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
C9orf40Q8IXQ3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 AC138907.5-202ENST00000569484 235 ntBASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 IKBKGP1-201ENST00000612193 1073 ntBASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
C9orf40Q8IXQ3 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 AC010141.2-201ENST00000452426 721 ntBASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 AP001160.3-201ENST00000601484 763 ntBASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 AC092666.2-201ENST00000613287 246 ntBASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
C9orf40Q8IXQ3 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 AC137761.2-201ENST00000561729 223 ntBASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 AC145350.3-201ENST00000569033 163 ntBASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 AC092437.1-201ENST00000624794 1048 ntBASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
C9orf40Q8IXQ3 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
C9orf40Q8IXQ3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 AC079834.2-201ENST00000609776 1949 ntBASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 FBXW4P1-201ENST00000426721 2239 ntBASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
C9orf40Q8IXQ3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.58■□□□□ 0.73
C9orf40Q8IXQ3 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
C9orf40Q8IXQ3 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
C9orf40Q8IXQ3 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
C9orf40Q8IXQ3 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms