Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 KRT87P-202ENST00000534226 1464 ntBASIC26.02■■□□□ 1.76
USP48Q86UV5 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP48Q86UV5 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP48Q86UV5 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
USP48Q86UV5 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP48Q86UV5 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
USP48Q86UV5 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
USP48Q86UV5 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
USP48Q86UV5 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
USP48Q86UV5 POU5F1P3-201ENST00000428824 1078 ntBASIC26.01■■□□□ 1.75
USP48Q86UV5 AC073210.2-201ENST00000430369 194 ntBASIC26.01■■□□□ 1.75
USP48Q86UV5 OXCT2P1-201ENST00000447263 1535 ntBASIC26.01■■□□□ 1.75
USP48Q86UV5 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC26.01■■□□□ 1.75
USP48Q86UV5 BRI3-207ENST00000539286 699 ntTSL 2 BASIC26.01■■□□□ 1.75
USP48Q86UV5 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
USP48Q86UV5 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC26.01■■□□□ 1.75
USP48Q86UV5 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC26.01■■□□□ 1.75
USP48Q86UV5 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
USP48Q86UV5 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC26■■□□□ 1.75
USP48Q86UV5 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
USP48Q86UV5 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC26■■□□□ 1.75
USP48Q86UV5 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
USP48Q86UV5 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
USP48Q86UV5 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC26■■□□□ 1.75
USP48Q86UV5 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
USP48Q86UV5 MYCNOS-205ENST00000641950 531 ntBASIC26■■□□□ 1.75
USP48Q86UV5 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC26■■□□□ 1.75
USP48Q86UV5 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
USP48Q86UV5 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
USP48Q86UV5 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
USP48Q86UV5 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
USP48Q86UV5 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
USP48Q86UV5 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC25.99■■□□□ 1.75
USP48Q86UV5 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
USP48Q86UV5 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC25.99■■□□□ 1.75
USP48Q86UV5 ITM2C-210ENST00000620962 501 ntBASIC25.99■■□□□ 1.75
USP48Q86UV5 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
USP48Q86UV5 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC25.99■■□□□ 1.75
USP48Q86UV5 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
USP48Q86UV5 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
USP48Q86UV5 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC25.98■■□□□ 1.75
USP48Q86UV5 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
USP48Q86UV5 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
USP48Q86UV5 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
USP48Q86UV5 AC127496.7-201ENST00000625110 1798 ntBASIC25.98■■□□□ 1.75
USP48Q86UV5 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
USP48Q86UV5 KRT18P29-201ENST00000397031 1267 ntBASIC25.98■■□□□ 1.75
USP48Q86UV5 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC25.98■■□□□ 1.75
USP48Q86UV5 AC005224.4-201ENST00000583262 1652 ntBASIC25.98■■□□□ 1.75
USP48Q86UV5 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
USP48Q86UV5 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.98■■□□□ 1.75
USP48Q86UV5 WWC2-AS2-201ENST00000578387 2183 ntBASIC25.97■■□□□ 1.75
USP48Q86UV5 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC25.97■■□□□ 1.75
USP48Q86UV5 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP48Q86UV5 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
USP48Q86UV5 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP48Q86UV5 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC25.97■■□□□ 1.75
USP48Q86UV5 CNN2P6-201ENST00000439038 900 ntBASIC25.97■■□□□ 1.75
USP48Q86UV5 AP001160.3-201ENST00000601484 763 ntBASIC25.97■■□□□ 1.75
USP48Q86UV5 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
USP48Q86UV5 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC25.97■■□□□ 1.75
USP48Q86UV5 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
USP48Q86UV5 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC25.96■■□□□ 1.75
USP48Q86UV5 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC25.96■■□□□ 1.75
USP48Q86UV5 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC25.96■■□□□ 1.75
USP48Q86UV5 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
USP48Q86UV5 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC25.96■■□□□ 1.75
USP48Q86UV5 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
USP48Q86UV5 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
USP48Q86UV5 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
USP48Q86UV5 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
USP48Q86UV5 AC133552.2-202ENST00000575694 574 ntBASIC25.95■■□□□ 1.74
USP48Q86UV5 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
USP48Q86UV5 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC25.95■■□□□ 1.74
USP48Q86UV5 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
USP48Q86UV5 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
USP48Q86UV5 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC25.95■■□□□ 1.74
USP48Q86UV5 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25.95■■□□□ 1.74
USP48Q86UV5 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
USP48Q86UV5 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.95■■□□□ 1.74
USP48Q86UV5 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
USP48Q86UV5 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
USP48Q86UV5 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.74
USP48Q86UV5 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC25.95■■□□□ 1.74
USP48Q86UV5 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 PRORSD1P-201ENST00000295112 541 ntBASIC25.94■■□□□ 1.74
USP48Q86UV5 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC25.94■■□□□ 1.74
USP48Q86UV5 RNA5SP413-201ENST00000516373 109 ntBASIC25.94■■□□□ 1.74
USP48Q86UV5 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
USP48Q86UV5 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC25.94■■□□□ 1.74
USP48Q86UV5 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC25.94■■□□□ 1.74
USP48Q86UV5 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC25.94■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms