Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 AC055733.4-201ENST00000638462 1354 ntBASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 AC005837.3-201ENST00000612163 286 ntBASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 AC009237.3-201ENST00000393279 1427 ntBASIC21.04■□□□□ 0.96
ZNF549Q6P9A3 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 AC142381.2-201ENST00000566120 298 ntBASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 BX005040.4-201ENST00000637145 1518 ntBASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF549Q6P9A3 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 AL024507.2-201ENST00000606070 2574 ntBASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.02■□□□□ 0.96
ZNF549Q6P9A3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
ZNF549Q6P9A3 AC005224.4-201ENST00000583262 1652 ntBASIC21.02■□□□□ 0.95
ZNF549Q6P9A3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.02■□□□□ 0.95
ZNF549Q6P9A3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.95
ZNF549Q6P9A3 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 AC012414.1-201ENST00000556676 535 ntBASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF549Q6P9A3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21■□□□□ 0.95
ZNF549Q6P9A3 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF549Q6P9A3 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF549Q6P9A3 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21■□□□□ 0.95
ZNF549Q6P9A3 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF549Q6P9A3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF549Q6P9A3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZNF549Q6P9A3 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF549Q6P9A3 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21■□□□□ 0.95
ZNF549Q6P9A3 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
ZNF549Q6P9A3 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF549Q6P9A3 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21■□□□□ 0.95
ZNF549Q6P9A3 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21■□□□□ 0.95
ZNF549Q6P9A3 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21■□□□□ 0.95
ZNF549Q6P9A3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF549Q6P9A3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
ZNF549Q6P9A3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms