Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RUNDC3AQ59EK9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
RUNDC3AQ59EK9 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.99■□□□□ 0.79
RUNDC3AQ59EK9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 FEM1AP1-201ENST00000431297 1995 ntBASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 GUSBP5-201ENST00000418136 578 ntBASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 AP005435.1-201ENST00000529293 1178 ntBASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 AL138724.1-201ENST00000606771 1088 ntBASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 AL035685.1-201ENST00000636663 812 ntBASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 LINC01006-201ENST00000333319 2292 ntBASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.98■□□□□ 0.79
RUNDC3AQ59EK9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 SERBP1P1-201ENST00000396021 1160 ntBASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RUNDC3AQ59EK9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RUNDC3AQ59EK9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RUNDC3AQ59EK9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms