Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 ECEL1P1-201ENST00000373592 1742 ntBASIC21.07■□□□□ 0.96
LRRK1Q38SD2 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 C11orf96-202ENST00000528572 1834 ntBASIC21.07■□□□□ 0.96
LRRK1Q38SD2 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
LRRK1Q38SD2 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LRRK1Q38SD2 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRK1Q38SD2 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRK1Q38SD2 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.06■□□□□ 0.96
LRRK1Q38SD2 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LRRK1Q38SD2 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.06■□□□□ 0.96
LRRK1Q38SD2 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
LRRK1Q38SD2 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.06■□□□□ 0.96
LRRK1Q38SD2 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRK1Q38SD2 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRK1Q38SD2 AC061975.6-201ENST00000579045 1553 ntBASIC21.06■□□□□ 0.96
LRRK1Q38SD2 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 AC080038.1-201ENST00000611274 1154 ntBASIC21.05■□□□□ 0.96
LRRK1Q38SD2 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LRRK1Q38SD2 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 AC011767.1-201ENST00000617410 1153 ntBASIC21.04■□□□□ 0.96
LRRK1Q38SD2 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 KRT16P2-201ENST00000414673 1423 ntBASIC21.04■□□□□ 0.96
LRRK1Q38SD2 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 AC231657.2-201ENST00000624556 255 ntBASIC21.04■□□□□ 0.96
LRRK1Q38SD2 AC013268.1-206ENST00000638368 961 ntBASIC21.04■□□□□ 0.96
LRRK1Q38SD2 AC112229.1-201ENST00000639295 961 ntBASIC21.04■□□□□ 0.96
LRRK1Q38SD2 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
LRRK1Q38SD2 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRRK1Q38SD2 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRK1Q38SD2 AC010536.3-201ENST00000620306 533 ntBASIC21.02■□□□□ 0.96
LRRK1Q38SD2 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
LRRK1Q38SD2 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LRRK1Q38SD2 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.02■□□□□ 0.96
LRRK1Q38SD2 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.02■□□□□ 0.96
LRRK1Q38SD2 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
LRRK1Q38SD2 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
LRRK1Q38SD2 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRK1Q38SD2 AC008175.2-201ENST00000612840 297 ntBASIC21.02■□□□□ 0.96
LRRK1Q38SD2 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.02■□□□□ 0.95
LRRK1Q38SD2 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
LRRK1Q38SD2 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRRK1Q38SD2 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRRK1Q38SD2 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRRK1Q38SD2 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LRRK1Q38SD2 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRRK1Q38SD2 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
LRRK1Q38SD2 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRRK1Q38SD2 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRRK1Q38SD2 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
LRRK1Q38SD2 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRRK1Q38SD2 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21■□□□□ 0.95
LRRK1Q38SD2 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
LRRK1Q38SD2 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms