Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFX4Q33E94 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFX4Q33E94 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFX4Q33E94 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFX4Q33E94 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RFX4Q33E94 AL049796.1-201ENST00000565336 1766 ntBASIC19.66■□□□□ 0.74
RFX4Q33E94 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFX4Q33E94 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.66■□□□□ 0.74
RFX4Q33E94 MIR6724-1-201ENST00000616420 92 ntBASIC19.66■□□□□ 0.74
RFX4Q33E94 MIR6724-2-201ENST00000616483 92 ntBASIC19.66■□□□□ 0.74
RFX4Q33E94 MIR6724-4-201ENST00000617390 92 ntBASIC19.66■□□□□ 0.74
RFX4Q33E94 MIR6724-3-201ENST00000622482 92 ntBASIC19.66■□□□□ 0.74
RFX4Q33E94 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RFX4Q33E94 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFX4Q33E94 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFX4Q33E94 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RFX4Q33E94 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
RFX4Q33E94 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.65■□□□□ 0.74
RFX4Q33E94 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
RFX4Q33E94 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 AC079089.2-201ENST00000531211 1277 ntBASIC19.65■□□□□ 0.74
RFX4Q33E94 AL117332.1-201ENST00000622628 974 ntBASIC19.65■□□□□ 0.74
RFX4Q33E94 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.65■□□□□ 0.74
RFX4Q33E94 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.65■□□□□ 0.74
RFX4Q33E94 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFX4Q33E94 AC026471.6-201ENST00000622954 1905 ntBASIC19.64■□□□□ 0.74
RFX4Q33E94 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RFX4Q33E94 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
RFX4Q33E94 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.64■□□□□ 0.74
RFX4Q33E94 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX4Q33E94 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
RFX4Q33E94 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX4Q33E94 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
RFX4Q33E94 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX4Q33E94 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RFX4Q33E94 AL451085.2-201ENST00000605085 799 ntBASIC19.64■□□□□ 0.73
RFX4Q33E94 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.64■□□□□ 0.73
RFX4Q33E94 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX4Q33E94 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX4Q33E94 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.64■□□□□ 0.73
RFX4Q33E94 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.64■□□□□ 0.73
RFX4Q33E94 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.64■□□□□ 0.73
RFX4Q33E94 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.64■□□□□ 0.73
RFX4Q33E94 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RFX4Q33E94 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.64■□□□□ 0.73
RFX4Q33E94 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.64■□□□□ 0.73
RFX4Q33E94 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.63■□□□□ 0.73
RFX4Q33E94 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.63■□□□□ 0.73
RFX4Q33E94 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
RFX4Q33E94 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.63■□□□□ 0.73
RFX4Q33E94 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
RFX4Q33E94 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
RFX4Q33E94 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 AC241377.3-202ENST00000626088 1088 ntBASIC19.63■□□□□ 0.73
RFX4Q33E94 AC241585.3-202ENST00000628937 1088 ntBASIC19.63■□□□□ 0.73
RFX4Q33E94 AC245100.8-202ENST00000629247 1058 ntBASIC19.63■□□□□ 0.73
RFX4Q33E94 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
RFX4Q33E94 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.63■□□□□ 0.73
RFX4Q33E94 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX4Q33E94 GABARAPL3-202ENST00000624044 1851 ntBASIC19.62■□□□□ 0.73
RFX4Q33E94 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
RFX4Q33E94 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX4Q33E94 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX4Q33E94 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.62■□□□□ 0.73
RFX4Q33E94 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.62■□□□□ 0.73
RFX4Q33E94 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
RFX4Q33E94 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.62■□□□□ 0.73
RFX4Q33E94 UNC93B8-201ENST00000511903 705 ntBASIC19.62■□□□□ 0.73
RFX4Q33E94 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX4Q33E94 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.62■□□□□ 0.73
RFX4Q33E94 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX4Q33E94 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.62■□□□□ 0.73
RFX4Q33E94 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms