Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 LINC01521-201ENST00000504184 1943 ntBASIC21.5■■□□□ 1.03
MSH2P43246 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
MSH2P43246 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH2P43246 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH2P43246 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH2P43246 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH2P43246 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
MSH2P43246 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH2P43246 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH2P43246 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH2P43246 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
MSH2P43246 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH2P43246 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
MSH2P43246 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH2P43246 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
MSH2P43246 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
MSH2P43246 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH2P43246 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH2P43246 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
MSH2P43246 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH2P43246 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH2P43246 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH2P43246 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH2P43246 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH2P43246 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.48■■□□□ 1.03
MSH2P43246 AC087239.1-201ENST00000622671 572 ntBASIC21.48■■□□□ 1.03
MSH2P43246 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH2P43246 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH2P43246 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH2P43246 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH2P43246 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH2P43246 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH2P43246 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH2P43246 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH2P43246 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH2P43246 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH2P43246 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH2P43246 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH2P43246 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
MSH2P43246 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH2P43246 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH2P43246 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH2P43246 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
MSH2P43246 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH2P43246 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH2P43246 AC099791.2-201ENST00000605725 427 ntBASIC21.47■■□□□ 1.03
MSH2P43246 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH2P43246 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
MSH2P43246 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH2P43246 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
MSH2P43246 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH2P43246 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH2P43246 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
MSH2P43246 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH2P43246 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH2P43246 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH2P43246 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
MSH2P43246 OXCT2P1-201ENST00000447263 1535 ntBASIC21.46■■□□□ 1.03
MSH2P43246 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH2P43246 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH2P43246 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH2P43246 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.46■■□□□ 1.03
MSH2P43246 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH2P43246 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH2P43246 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MSH2P43246 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH2P43246 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
MSH2P43246 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH2P43246 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH2P43246 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH2P43246 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.45■■□□□ 1.02
MSH2P43246 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH2P43246 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
MSH2P43246 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH2P43246 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH2P43246 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MSH2P43246 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH2P43246 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.45■■□□□ 1.02
MSH2P43246 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.45■■□□□ 1.02
MSH2P43246 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH2P43246 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH2P43246 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH2P43246 AC007952.6-201ENST00000573168 2673 ntBASIC21.44■■□□□ 1.02
MSH2P43246 AC003957.1-201ENST00000625108 2673 ntBASIC21.44■■□□□ 1.02
MSH2P43246 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.44■■□□□ 1.02
MSH2P43246 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MSH2P43246 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.44■■□□□ 1.02
MSH2P43246 AC010141.3-201ENST00000456659 717 ntBASIC21.44■■□□□ 1.02
MSH2P43246 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.44■■□□□ 1.02
MSH2P43246 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH2P43246 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
MSH2P43246 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.44■■□□□ 1.02
MSH2P43246 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH2P43246 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH2P43246 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.43■■□□□ 1.02
MSH2P43246 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms