Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC26.27■■□□□ 1.8
BRCA1P38398 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC26.27■■□□□ 1.8
BRCA1P38398 AC142381.3-201ENST00000568208 1670 ntBASIC26.27■■□□□ 1.8
BRCA1P38398 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC26.27■■□□□ 1.8
BRCA1P38398 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC26.27■■□□□ 1.8
BRCA1P38398 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC26.27■■□□□ 1.8
BRCA1P38398 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC26.27■■□□□ 1.8
BRCA1P38398 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
BRCA1P38398 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
BRCA1P38398 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC26.27■■□□□ 1.8
BRCA1P38398 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC26.27■■□□□ 1.8
BRCA1P38398 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
BRCA1P38398 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC26.27■■□□□ 1.8
BRCA1P38398 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC26.27■■□□□ 1.8
BRCA1P38398 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
BRCA1P38398 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
BRCA1P38398 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC26.27■■□□□ 1.8
BRCA1P38398 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
BRCA1P38398 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC26.26■■□□□ 1.8
BRCA1P38398 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
BRCA1P38398 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC26.26■■□□□ 1.79
BRCA1P38398 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC26.26■■□□□ 1.79
BRCA1P38398 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
BRCA1P38398 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
BRCA1P38398 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
BRCA1P38398 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
BRCA1P38398 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
BRCA1P38398 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC26.26■■□□□ 1.79
BRCA1P38398 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
BRCA1P38398 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
BRCA1P38398 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC26.25■■□□□ 1.79
BRCA1P38398 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
BRCA1P38398 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC26.25■■□□□ 1.79
BRCA1P38398 CYP2T3P-201ENST00000601990 817 ntBASIC26.25■■□□□ 1.79
BRCA1P38398 AC008175.2-201ENST00000612840 297 ntBASIC26.25■■□□□ 1.79
BRCA1P38398 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC26.25■■□□□ 1.79
BRCA1P38398 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC26.25■■□□□ 1.79
BRCA1P38398 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
BRCA1P38398 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC26.25■■□□□ 1.79
BRCA1P38398 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
BRCA1P38398 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
BRCA1P38398 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
BRCA1P38398 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC26.25■■□□□ 1.79
BRCA1P38398 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
BRCA1P38398 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC26.25■■□□□ 1.79
BRCA1P38398 Z99916.2-201ENST00000604037 246 ntBASIC26.25■■□□□ 1.79
BRCA1P38398 AL591742.1-201ENST00000604433 565 ntBASIC26.25■■□□□ 1.79
BRCA1P38398 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
BRCA1P38398 LINC00526-201ENST00000581067 1875 ntBASIC26.25■■□□□ 1.79
BRCA1P38398 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
BRCA1P38398 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC26.24■■□□□ 1.79
BRCA1P38398 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
BRCA1P38398 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
BRCA1P38398 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
BRCA1P38398 AC120498.10-201ENST00000621827 505 ntBASIC26.24■■□□□ 1.79
BRCA1P38398 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
BRCA1P38398 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
BRCA1P38398 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
BRCA1P38398 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
BRCA1P38398 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
BRCA1P38398 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC26.23■■□□□ 1.79
BRCA1P38398 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC26.23■■□□□ 1.79
BRCA1P38398 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC26.23■■□□□ 1.79
BRCA1P38398 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC26.23■■□□□ 1.79
BRCA1P38398 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
BRCA1P38398 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
BRCA1P38398 OR7E47P-201ENST00000546390 1422 ntBASIC26.23■■□□□ 1.79
BRCA1P38398 NME6-213ENST00000451657 871 ntTSL 2 BASIC26.23■■□□□ 1.79
BRCA1P38398 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC26.23■■□□□ 1.79
BRCA1P38398 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
BRCA1P38398 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
BRCA1P38398 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC26.22■■□□□ 1.79
BRCA1P38398 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
BRCA1P38398 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
BRCA1P38398 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
BRCA1P38398 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
BRCA1P38398 POU5F1P4-201ENST00000413175 1085 ntBASIC26.22■■□□□ 1.79
BRCA1P38398 KRT18P21-201ENST00000515767 1272 ntBASIC26.22■■□□□ 1.79
BRCA1P38398 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC26.22■■□□□ 1.79
BRCA1P38398 PPOX-219ENST00000544598 813 ntTSL 2 BASIC26.22■■□□□ 1.79
BRCA1P38398 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
BRCA1P38398 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
BRCA1P38398 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
BRCA1P38398 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
BRCA1P38398 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
BRCA1P38398 PBX1-209ENST00000485769 834 ntTSL 2 BASIC26.21■■□□□ 1.79
BRCA1P38398 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
BRCA1P38398 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
BRCA1P38398 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
BRCA1P38398 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
BRCA1P38398 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
BRCA1P38398 REXO2-216ENST00000544196 452 ntTSL 3 BASIC26.21■■□□□ 1.79
BRCA1P38398 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
BRCA1P38398 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
BRCA1P38398 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
BRCA1P38398 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC26.21■■□□□ 1.79
BRCA1P38398 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC26.21■■□□□ 1.79
BRCA1P38398 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
BRCA1P38398 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
BRCA1P38398 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC26.2■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms