Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 OR2A1-AS1-207ENST00000486094 819 ntBASIC28.32■■■□□ 2.12
RXRBP28702 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RXRBP28702 AL135905.2-201ENST00000584934 1404 ntBASIC28.32■■■□□ 2.12
RXRBP28702 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RXRBP28702 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC28.32■■■□□ 2.12
RXRBP28702 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
RXRBP28702 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RXRBP28702 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
RXRBP28702 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RXRBP28702 TPM4P1-201ENST00000436100 807 ntBASIC28.31■■■□□ 2.12
RXRBP28702 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC28.31■■■□□ 2.12
RXRBP28702 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC28.31■■■□□ 2.12
RXRBP28702 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RXRBP28702 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
RXRBP28702 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RXRBP28702 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RXRBP28702 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RXRBP28702 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RXRBP28702 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RXRBP28702 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RXRBP28702 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RXRBP28702 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RXRBP28702 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC28.3■■■□□ 2.12
RXRBP28702 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
RXRBP28702 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RXRBP28702 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RXRBP28702 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RXRBP28702 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC28.29■■■□□ 2.12
RXRBP28702 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RXRBP28702 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RXRBP28702 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC28.29■■■□□ 2.12
RXRBP28702 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RXRBP28702 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC28.29■■■□□ 2.12
RXRBP28702 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC28.29■■■□□ 2.12
RXRBP28702 POM121L13P-201ENST00000422362 380 ntBASIC28.29■■■□□ 2.12
RXRBP28702 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC28.29■■■□□ 2.12
RXRBP28702 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC28.29■■■□□ 2.12
RXRBP28702 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC28.29■■■□□ 2.12
RXRBP28702 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RXRBP28702 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC28.29■■■□□ 2.12
RXRBP28702 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC28.29■■■□□ 2.12
RXRBP28702 DUSP8P3-201ENST00000399571 1760 ntBASIC28.29■■■□□ 2.12
RXRBP28702 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC28.28■■■□□ 2.12
RXRBP28702 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC28.28■■■□□ 2.12
RXRBP28702 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC28.28■■■□□ 2.12
RXRBP28702 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RXRBP28702 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RXRBP28702 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC28.28■■■□□ 2.12
RXRBP28702 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC28.28■■■□□ 2.12
RXRBP28702 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC28.28■■■□□ 2.12
RXRBP28702 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC28.28■■■□□ 2.12
RXRBP28702 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RXRBP28702 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
RXRBP28702 FGF8-207ENST00000618991 856 ntTSL 3 BASIC28.28■■■□□ 2.12
RXRBP28702 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC28.28■■■□□ 2.12
RXRBP28702 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC28.28■■■□□ 2.12
RXRBP28702 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RXRBP28702 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC28.27■■■□□ 2.12
RXRBP28702 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RXRBP28702 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC28.27■■■□□ 2.12
RXRBP28702 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
RXRBP28702 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC28.27■■■□□ 2.12
RXRBP28702 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC28.27■■■□□ 2.12
RXRBP28702 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RXRBP28702 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RXRBP28702 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
RXRBP28702 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RXRBP28702 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC28.27■■■□□ 2.12
RXRBP28702 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RXRBP28702 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RXRBP28702 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RXRBP28702 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RXRBP28702 SLC29A4P2-201ENST00000504749 1089 ntBASIC28.26■■■□□ 2.11
RXRBP28702 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
RXRBP28702 AC008175.2-201ENST00000612840 297 ntBASIC28.26■■■□□ 2.11
RXRBP28702 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC28.26■■■□□ 2.11
RXRBP28702 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
RXRBP28702 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RXRBP28702 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
RXRBP28702 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC28.25■■■□□ 2.11
RXRBP28702 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RXRBP28702 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
RXRBP28702 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC28.25■■■□□ 2.11
RXRBP28702 REXO2-208ENST00000539754 791 ntTSL 2 BASIC28.25■■■□□ 2.11
RXRBP28702 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC28.25■■■□□ 2.11
RXRBP28702 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC28.25■■■□□ 2.11
RXRBP28702 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
RXRBP28702 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
RXRBP28702 AC135731.1-201ENST00000569415 2548 ntBASIC28.25■■■□□ 2.11
RXRBP28702 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC28.25■■■□□ 2.11
RXRBP28702 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC28.25■■■□□ 2.11
RXRBP28702 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
RXRBP28702 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
RXRBP28702 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RXRBP28702 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RXRBP28702 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC28.24■■■□□ 2.11
RXRBP28702 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RXRBP28702 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RXRBP28702 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
RXRBP28702 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms