Protein–RNA interactions for Protein: P09661

SNRPA1, U2 small nuclear ribonucleoprotein A', humanhuman

Known RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1P09661 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SNRPA1P09661 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
SNRPA1P09661 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
SNRPA1P09661 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC27.2■■□□□ 1.95
SNRPA1P09661 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
SNRPA1P09661 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
SNRPA1P09661 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC27.2■■□□□ 1.94
SNRPA1P09661 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SNRPA1P09661 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC27.2■■□□□ 1.94
SNRPA1P09661 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SNRPA1P09661 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC27.2■■□□□ 1.94
SNRPA1P09661 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SNRPA1P09661 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SNRPA1P09661 KRT18P6-201ENST00000555540 1265 ntBASIC27.2■■□□□ 1.94
SNRPA1P09661 RGMA-211ENST00000557420 989 ntTSL 3 BASIC27.2■■□□□ 1.94
SNRPA1P09661 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC27.2■■□□□ 1.94
SNRPA1P09661 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC27.2■■□□□ 1.94
SNRPA1P09661 AC133041.1-202ENST00000642053 222 ntBASIC27.2■■□□□ 1.94
SNRPA1P09661 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.94
SNRPA1P09661 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
SNRPA1P09661 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SNRPA1P09661 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SNRPA1P09661 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC27.19■■□□□ 1.94
SNRPA1P09661 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
SNRPA1P09661 C1orf229-201ENST00000623686 2258 ntBASIC27.19■■□□□ 1.94
SNRPA1P09661 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SNRPA1P09661 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SNRPA1P09661 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC27.19■■□□□ 1.94
SNRPA1P09661 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
SNRPA1P09661 OR10C1-204ENST00000622521 1039 ntBASIC27.19■■□□□ 1.94
SNRPA1P09661 MARS-234ENST00000630571 216 ntTSL 5 BASIC27.19■■□□□ 1.94
SNRPA1P09661 MARS-235ENST00000630803 183 ntTSL 3 BASIC27.19■■□□□ 1.94
SNRPA1P09661 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC27.19■■□□□ 1.94
SNRPA1P09661 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SNRPA1P09661 AC127496.7-201ENST00000625110 1798 ntBASIC27.19■■□□□ 1.94
SNRPA1P09661 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SNRPA1P09661 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC27.19■■□□□ 1.94
SNRPA1P09661 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
SNRPA1P09661 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SNRPA1P09661 AC080038.3-201ENST00000623346 1952 ntBASIC27.18■■□□□ 1.94
SNRPA1P09661 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
SNRPA1P09661 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
SNRPA1P09661 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC27.18■■□□□ 1.94
SNRPA1P09661 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SNRPA1P09661 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC27.18■■□□□ 1.94
SNRPA1P09661 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
SNRPA1P09661 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SNRPA1P09661 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC27.18■■□□□ 1.94
SNRPA1P09661 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SNRPA1P09661 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
SNRPA1P09661 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SNRPA1P09661 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC27.18■■□□□ 1.94
SNRPA1P09661 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SNRPA1P09661 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC27.17■■□□□ 1.94
SNRPA1P09661 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SNRPA1P09661 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SNRPA1P09661 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC27.17■■□□□ 1.94
SNRPA1P09661 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SNRPA1P09661 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SNRPA1P09661 AC061975.6-201ENST00000579045 1553 ntBASIC27.17■■□□□ 1.94
SNRPA1P09661 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.94
SNRPA1P09661 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SNRPA1P09661 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SNRPA1P09661 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SNRPA1P09661 RBM17P2-201ENST00000616397 1405 ntBASIC27.16■■□□□ 1.94
SNRPA1P09661 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SNRPA1P09661 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC27.16■■□□□ 1.94
SNRPA1P09661 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
SNRPA1P09661 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SNRPA1P09661 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC27.16■■□□□ 1.94
SNRPA1P09661 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SNRPA1P09661 AC098934.4-201ENST00000564127 592 ntBASIC27.16■■□□□ 1.94
SNRPA1P09661 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC27.16■■□□□ 1.94
SNRPA1P09661 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC27.16■■□□□ 1.94
SNRPA1P09661 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC27.16■■□□□ 1.94
SNRPA1P09661 CASK-201ENST00000378154 2494 ntTSL 5 BASIC27.16■■□□□ 1.94
SNRPA1P09661 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SNRPA1P09661 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC27.15■■□□□ 1.94
SNRPA1P09661 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SNRPA1P09661 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SNRPA1P09661 FGF8-207ENST00000618991 856 ntTSL 3 BASIC27.15■■□□□ 1.94
SNRPA1P09661 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SNRPA1P09661 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
SNRPA1P09661 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SNRPA1P09661 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SNRPA1P09661 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
SNRPA1P09661 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC27.14■■□□□ 1.94
SNRPA1P09661 MIPEPP3-201ENST00000412105 444 ntBASIC27.14■■□□□ 1.94
SNRPA1P09661 AL512625.2-201ENST00000417533 625 ntBASIC27.14■■□□□ 1.94
SNRPA1P09661 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SNRPA1P09661 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SNRPA1P09661 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC27.14■■□□□ 1.94
SNRPA1P09661 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC27.14■■□□□ 1.94
SNRPA1P09661 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC27.14■■□□□ 1.94
SNRPA1P09661 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SNRPA1P09661 C9orf163-202ENST00000624034 2573 ntBASIC27.14■■□□□ 1.94
SNRPA1P09661 MKRN4P-201ENST00000444706 1521 ntBASIC27.14■■□□□ 1.94
SNRPA1P09661 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
SNRPA1P09661 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
SNRPA1P09661 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC27.14■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms