Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
VIMP08670 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
VIMP08670 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
VIMP08670 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VIMP08670 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.25■□□□□ 0.99
VIMP08670 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VIMP08670 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VIMP08670 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.25■□□□□ 0.99
VIMP08670 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
VIMP08670 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VIMP08670 KRT18P24-201ENST00000344739 1156 ntBASIC21.25■□□□□ 0.99
VIMP08670 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VIMP08670 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.25■□□□□ 0.99
VIMP08670 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
VIMP08670 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
VIMP08670 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
VIMP08670 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.25■□□□□ 0.99
VIMP08670 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VIMP08670 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VIMP08670 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
VIMP08670 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VIMP08670 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
VIMP08670 AFG3L1P-217ENST00000557444 2447 ntBASIC21.24■□□□□ 0.99
VIMP08670 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VIMP08670 AL049796.1-201ENST00000565336 1766 ntBASIC21.24■□□□□ 0.99
VIMP08670 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VIMP08670 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VIMP08670 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VIMP08670 RARRES2P2-201ENST00000394842 485 ntBASIC21.24■□□□□ 0.99
VIMP08670 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VIMP08670 AC139795.1-202ENST00000500444 432 ntBASIC21.24■□□□□ 0.99
VIMP08670 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
VIMP08670 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.24■□□□□ 0.99
VIMP08670 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VIMP08670 C17orf82-201ENST00000623772 1530 ntBASIC21.24■□□□□ 0.99
VIMP08670 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VIMP08670 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VIMP08670 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.24■□□□□ 0.99
VIMP08670 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.23■□□□□ 0.99
VIMP08670 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VIMP08670 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VIMP08670 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.23■□□□□ 0.99
VIMP08670 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.23■□□□□ 0.99
VIMP08670 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VIMP08670 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.23■□□□□ 0.99
VIMP08670 SNX5-217ENST00000606557 1087 ntBASIC21.23■□□□□ 0.99
VIMP08670 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
VIMP08670 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.23■□□□□ 0.99
VIMP08670 GABARAPL3-202ENST00000624044 1851 ntBASIC21.23■□□□□ 0.99
VIMP08670 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VIMP08670 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.23■□□□□ 0.99
VIMP08670 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.22■□□□□ 0.99
VIMP08670 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.22■□□□□ 0.99
VIMP08670 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
VIMP08670 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.22■□□□□ 0.99
VIMP08670 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.22■□□□□ 0.99
VIMP08670 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.22■□□□□ 0.99
VIMP08670 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.22■□□□□ 0.99
VIMP08670 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
VIMP08670 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.22■□□□□ 0.99
VIMP08670 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.22■□□□□ 0.99
VIMP08670 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VIMP08670 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.21■□□□□ 0.99
VIMP08670 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
VIMP08670 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VIMP08670 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
VIMP08670 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
VIMP08670 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
VIMP08670 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.21■□□□□ 0.99
VIMP08670 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.21■□□□□ 0.99
VIMP08670 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VIMP08670 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.21■□□□□ 0.99
VIMP08670 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.21■□□□□ 0.99
VIMP08670 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VIMP08670 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VIMP08670 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.2■□□□□ 0.99
VIMP08670 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
VIMP08670 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
VIMP08670 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VIMP08670 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VIMP08670 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.2■□□□□ 0.98
VIMP08670 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.2■□□□□ 0.98
VIMP08670 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VIMP08670 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
VIMP08670 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VIMP08670 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.2■□□□□ 0.98
VIMP08670 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.2■□□□□ 0.98
VIMP08670 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VIMP08670 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
VIMP08670 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms