Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC9.61□□□□□ -0.87
USH2AO75445 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC9.61□□□□□ -0.87
USH2AO75445 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC9.61□□□□□ -0.87
USH2AO75445 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC9.61□□□□□ -0.87
USH2AO75445 KRT8P9-201ENST00000558927 1449 ntBASIC9.61□□□□□ -0.87
USH2AO75445 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC9.61□□□□□ -0.87
USH2AO75445 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC9.61□□□□□ -0.87
USH2AO75445 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC9.61□□□□□ -0.87
USH2AO75445 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC9.61□□□□□ -0.87
USH2AO75445 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC9.61□□□□□ -0.87
USH2AO75445 HLA-B-256ENST00000639848 1089 ntBASIC9.61□□□□□ -0.87
USH2AO75445 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 KLF2-202ENST00000592003 564 ntTSL 3 BASIC9.6□□□□□ -0.87
USH2AO75445 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC9.6□□□□□ -0.87
USH2AO75445 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 TERF1P1-201ENST00000311003 1181 ntBASIC9.6□□□□□ -0.87
USH2AO75445 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC9.6□□□□□ -0.87
USH2AO75445 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC9.6□□□□□ -0.87
USH2AO75445 NTF6B-201ENST00000591913 560 ntBASIC9.6□□□□□ -0.87
USH2AO75445 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC9.6□□□□□ -0.87
USH2AO75445 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC9.6□□□□□ -0.87
USH2AO75445 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC9.6□□□□□ -0.87
USH2AO75445 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 AC073508.3-201ENST00000619697 1419 ntBASIC9.6□□□□□ -0.87
USH2AO75445 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
USH2AO75445 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC9.6□□□□□ -0.87
USH2AO75445 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
USH2AO75445 TK2-204ENST00000525974 1178 ntTSL 2 BASIC9.6□□□□□ -0.87
USH2AO75445 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC9.6□□□□□ -0.87
USH2AO75445 TOLLIP-AS1-201ENST00000530897 939 ntBASIC9.6□□□□□ -0.87
USH2AO75445 AL049637.2-201ENST00000641778 930 ntBASIC9.6□□□□□ -0.87
USH2AO75445 USP45-205ENST00000472914 1617 ntTSL 5 BASIC9.6□□□□□ -0.87
USH2AO75445 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC9.59□□□□□ -0.87
USH2AO75445 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
USH2AO75445 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC9.59□□□□□ -0.87
USH2AO75445 CRYGFP-201ENST00000418459 633 ntBASIC9.59□□□□□ -0.87
USH2AO75445 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC9.59□□□□□ -0.87
USH2AO75445 AL162412.1-201ENST00000567129 965 ntBASIC9.59□□□□□ -0.87
USH2AO75445 EI24-213ENST00000618552 1747 ntTSL 5 BASIC9.59□□□□□ -0.87
USH2AO75445 KRT17P1-201ENST00000399211 1546 ntBASIC9.59□□□□□ -0.87
USH2AO75445 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC9.59□□□□□ -0.87
USH2AO75445 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC9.59□□□□□ -0.87
USH2AO75445 RARRES2P10-201ENST00000564312 460 ntBASIC9.59□□□□□ -0.87
USH2AO75445 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC9.59□□□□□ -0.87
USH2AO75445 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC9.59□□□□□ -0.87
USH2AO75445 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC9.59□□□□□ -0.87
USH2AO75445 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.87
USH2AO75445 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.88
USH2AO75445 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC9.59□□□□□ -0.88
USH2AO75445 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC9.59□□□□□ -0.88
USH2AO75445 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC9.59□□□□□ -0.88
USH2AO75445 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC9.59□□□□□ -0.88
USH2AO75445 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC9.58□□□□□ -0.88
USH2AO75445 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC9.58□□□□□ -0.88
USH2AO75445 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC9.58□□□□□ -0.88
USH2AO75445 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
USH2AO75445 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
USH2AO75445 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC9.58□□□□□ -0.88
USH2AO75445 KRT18P20-201ENST00000548986 1279 ntBASIC9.58□□□□□ -0.88
USH2AO75445 METTL23-204ENST00000586752 904 ntTSL 2 BASIC9.58□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms