Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
XRCC3O43542 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
XRCC3O43542 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
XRCC3O43542 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.15■□□□□ 0.5
XRCC3O43542 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
XRCC3O43542 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.15■□□□□ 0.5
XRCC3O43542 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.15■□□□□ 0.5
XRCC3O43542 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.15■□□□□ 0.5
XRCC3O43542 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.15■□□□□ 0.5
XRCC3O43542 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
XRCC3O43542 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.14■□□□□ 0.49
XRCC3O43542 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
XRCC3O43542 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
XRCC3O43542 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.14■□□□□ 0.49
XRCC3O43542 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
XRCC3O43542 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
XRCC3O43542 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
XRCC3O43542 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
XRCC3O43542 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
XRCC3O43542 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
XRCC3O43542 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.14■□□□□ 0.49
XRCC3O43542 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
XRCC3O43542 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
XRCC3O43542 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
XRCC3O43542 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
XRCC3O43542 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
XRCC3O43542 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.14■□□□□ 0.49
XRCC3O43542 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
XRCC3O43542 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
XRCC3O43542 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
XRCC3O43542 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
XRCC3O43542 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
XRCC3O43542 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.13■□□□□ 0.49
XRCC3O43542 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.13■□□□□ 0.49
XRCC3O43542 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
XRCC3O43542 YBX1P4-201ENST00000392794 808 ntBASIC18.13■□□□□ 0.49
XRCC3O43542 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.13■□□□□ 0.49
XRCC3O43542 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.13■□□□□ 0.49
XRCC3O43542 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.13■□□□□ 0.49
XRCC3O43542 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.13■□□□□ 0.49
XRCC3O43542 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
XRCC3O43542 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
XRCC3O43542 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
XRCC3O43542 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
XRCC3O43542 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.13■□□□□ 0.49
XRCC3O43542 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
XRCC3O43542 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.13■□□□□ 0.49
XRCC3O43542 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.12■□□□□ 0.49
XRCC3O43542 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.12■□□□□ 0.49
XRCC3O43542 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.12■□□□□ 0.49
XRCC3O43542 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 AC006128.1-201ENST00000624704 1661 ntBASIC18.12■□□□□ 0.49
XRCC3O43542 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.12■□□□□ 0.49
XRCC3O43542 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
XRCC3O43542 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.12■□□□□ 0.49
XRCC3O43542 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
XRCC3O43542 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
XRCC3O43542 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.11■□□□□ 0.49
XRCC3O43542 AC073314.1-201ENST00000568729 2216 ntBASIC18.11■□□□□ 0.49
XRCC3O43542 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.11■□□□□ 0.49
XRCC3O43542 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
XRCC3O43542 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
XRCC3O43542 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
XRCC3O43542 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
XRCC3O43542 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
XRCC3O43542 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
XRCC3O43542 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
XRCC3O43542 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
XRCC3O43542 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.1■□□□□ 0.49
XRCC3O43542 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
XRCC3O43542 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
XRCC3O43542 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
XRCC3O43542 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
XRCC3O43542 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
XRCC3O43542 GUK1-208ENST00000366728 842 ntTSL 2 BASIC18.1■□□□□ 0.49
XRCC3O43542 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
XRCC3O43542 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.1■□□□□ 0.49
XRCC3O43542 AC068587.7-201ENST00000641602 218 ntBASIC18.1■□□□□ 0.49
XRCC3O43542 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.1■□□□□ 0.49
XRCC3O43542 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
XRCC3O43542 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms