Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGB3O15347 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB3O15347 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HMGB3O15347 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB3O15347 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB3O15347 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB3O15347 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGB3O15347 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB3O15347 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB3O15347 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGB3O15347 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB3O15347 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HMGB3O15347 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HMGB3O15347 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGB3O15347 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB3O15347 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGB3O15347 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGB3O15347 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB3O15347 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HMGB3O15347 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB3O15347 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB3O15347 FEM1AP4-201ENST00000443167 1987 ntBASIC17.04■□□□□ 0.32
HMGB3O15347 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB3O15347 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB3O15347 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGB3O15347 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB3O15347 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB3O15347 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB3O15347 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB3O15347 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB3O15347 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HMGB3O15347 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB3O15347 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB3O15347 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB3O15347 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB3O15347 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB3O15347 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.03■□□□□ 0.32
HMGB3O15347 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB3O15347 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB3O15347 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB3O15347 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB3O15347 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB3O15347 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB3O15347 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB3O15347 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HMGB3O15347 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB3O15347 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB3O15347 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB3O15347 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB3O15347 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB3O15347 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HMGB3O15347 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB3O15347 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.02■□□□□ 0.32
HMGB3O15347 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB3O15347 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.02■□□□□ 0.32
HMGB3O15347 LINC01521-201ENST00000504184 1943 ntBASIC17.02■□□□□ 0.32
HMGB3O15347 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB3O15347 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HMGB3O15347 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.02■□□□□ 0.32
HMGB3O15347 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB3O15347 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB3O15347 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB3O15347 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HMGB3O15347 AC004448.1-201ENST00000458332 883 ntBASIC17.02■□□□□ 0.32
HMGB3O15347 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC17.02■□□□□ 0.32
HMGB3O15347 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB3O15347 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.02■□□□□ 0.32
HMGB3O15347 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB3O15347 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
HMGB3O15347 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.02■□□□□ 0.31
HMGB3O15347 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGB3O15347 AF131216.4-201ENST00000638924 1588 ntBASIC17.02■□□□□ 0.31
HMGB3O15347 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGB3O15347 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
HMGB3O15347 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HMGB3O15347 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB3O15347 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB3O15347 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB3O15347 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB3O15347 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB3O15347 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HMGB3O15347 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB3O15347 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HMGB3O15347 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
HMGB3O15347 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGB3O15347 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB3O15347 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGB3O15347 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGB3O15347 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGB3O15347 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB3O15347 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB3O15347 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
HMGB3O15347 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17■□□□□ 0.31
HMGB3O15347 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB3O15347 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HMGB3O15347 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
HMGB3O15347 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms