Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC34.99■■■■□ 3.19
CHD1O14646 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC34.99■■■■□ 3.19
CHD1O14646 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC34.98■■■■□ 3.19
CHD1O14646 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
CHD1O14646 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC34.98■■■■□ 3.19
CHD1O14646 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC34.98■■■■□ 3.19
CHD1O14646 AL034346.1-201ENST00000568244 1277 ntBASIC34.98■■■■□ 3.19
CHD1O14646 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
CHD1O14646 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC34.98■■■■□ 3.19
CHD1O14646 CD44-222ENST00000526025 1052 ntTSL 2 BASIC34.98■■■■□ 3.19
CHD1O14646 RN7SL471P-201ENST00000580476 299 ntBASIC34.98■■■■□ 3.19
CHD1O14646 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC34.97■■■■□ 3.19
CHD1O14646 KRT16P2-201ENST00000414673 1423 ntBASIC34.97■■■■□ 3.19
CHD1O14646 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC34.97■■■■□ 3.19
CHD1O14646 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC34.97■■■■□ 3.19
CHD1O14646 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
CHD1O14646 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
CHD1O14646 RPS2P55-201ENST00000397318 883 ntBASIC34.96■■■■□ 3.19
CHD1O14646 AC107956.1-201ENST00000494359 873 ntBASIC34.96■■■■□ 3.19
CHD1O14646 C2orf69P4-201ENST00000565394 541 ntBASIC34.96■■■■□ 3.19
CHD1O14646 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC34.96■■■■□ 3.19
CHD1O14646 AC243732.1-201ENST00000612648 864 ntBASIC34.96■■■■□ 3.19
CHD1O14646 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC34.95■■■■□ 3.19
CHD1O14646 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC34.95■■■■□ 3.19
CHD1O14646 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
CHD1O14646 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC34.95■■■■□ 3.19
CHD1O14646 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.18
CHD1O14646 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC34.95■■■■□ 3.18
CHD1O14646 PBX1-209ENST00000485769 834 ntTSL 2 BASIC34.95■■■■□ 3.18
CHD1O14646 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.18
CHD1O14646 SOX15-203ENST00000570788 1093 ntBASIC34.95■■■■□ 3.18
CHD1O14646 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
CHD1O14646 AC022211.4-201ENST00000625094 2161 ntBASIC34.94■■■■□ 3.18
CHD1O14646 AC092368.3-202ENST00000574180 1591 ntBASIC34.94■■■■□ 3.18
CHD1O14646 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
CHD1O14646 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
CHD1O14646 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
CHD1O14646 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC34.94■■■■□ 3.18
CHD1O14646 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
CHD1O14646 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC34.94■■■■□ 3.18
CHD1O14646 SLC29A4P2-201ENST00000504749 1089 ntBASIC34.94■■■■□ 3.18
CHD1O14646 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC34.94■■■■□ 3.18
CHD1O14646 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC34.94■■■■□ 3.18
CHD1O14646 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
CHD1O14646 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC34.93■■■■□ 3.18
CHD1O14646 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC34.93■■■■□ 3.18
CHD1O14646 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC34.93■■■■□ 3.18
CHD1O14646 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC34.93■■■■□ 3.18
CHD1O14646 WDR88-203ENST00000592765 651 ntTSL 5 BASIC34.93■■■■□ 3.18
CHD1O14646 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
CHD1O14646 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC34.92■■■■□ 3.18
CHD1O14646 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC34.92■■■■□ 3.18
CHD1O14646 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC34.92■■■■□ 3.18
CHD1O14646 AC120498.10-201ENST00000621827 505 ntBASIC34.92■■■■□ 3.18
CHD1O14646 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC34.91■■■■□ 3.18
CHD1O14646 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC34.91■■■■□ 3.18
CHD1O14646 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
CHD1O14646 TMPOP1-202ENST00000424642 1267 ntBASIC34.91■■■■□ 3.18
CHD1O14646 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC34.91■■■■□ 3.18
CHD1O14646 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC34.91■■■■□ 3.18
CHD1O14646 AC079089.2-201ENST00000531211 1277 ntBASIC34.91■■■■□ 3.18
CHD1O14646 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
CHD1O14646 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
CHD1O14646 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC34.9■■■■□ 3.18
CHD1O14646 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC34.9■■■■□ 3.18
CHD1O14646 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
CHD1O14646 SNX21-213ENST00000614929 587 ntTSL 5 BASIC34.9■■■■□ 3.18
CHD1O14646 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
CHD1O14646 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC34.9■■■■□ 3.18
CHD1O14646 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC34.9■■■■□ 3.18
CHD1O14646 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
CHD1O14646 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC34.89■■■■□ 3.18
CHD1O14646 ISG20-202ENST00000379224 540 ntTSL 3 BASIC34.89■■■■□ 3.18
CHD1O14646 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC34.89■■■■□ 3.18
CHD1O14646 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
CHD1O14646 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
CHD1O14646 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC34.89■■■■□ 3.18
CHD1O14646 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
CHD1O14646 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
CHD1O14646 AC008175.2-201ENST00000612840 297 ntBASIC34.89■■■■□ 3.18
CHD1O14646 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC34.89■■■■□ 3.18
CHD1O14646 AL049637.2-201ENST00000641778 930 ntBASIC34.89■■■■□ 3.18
CHD1O14646 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
CHD1O14646 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
CHD1O14646 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC34.89■■■■□ 3.18
CHD1O14646 TSPY15P-201ENST00000457163 923 ntBASIC34.89■■■■□ 3.18
CHD1O14646 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC34.89■■■■□ 3.18
CHD1O14646 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
CHD1O14646 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC34.87■■■■□ 3.17
CHD1O14646 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC34.87■■■■□ 3.17
CHD1O14646 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC34.87■■■■□ 3.17
CHD1O14646 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC34.87■■■■□ 3.17
CHD1O14646 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC34.87■■■■□ 3.17
CHD1O14646 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
CHD1O14646 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
CHD1O14646 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
CHD1O14646 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC34.86■■■■□ 3.17
CHD1O14646 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
CHD1O14646 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC34.86■■■■□ 3.17
CHD1O14646 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC34.86■■■■□ 3.17
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms