Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDX4O14627 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDX4O14627 LSM12P1-201ENST00000411836 588 ntBASIC20.69■□□□□ 0.9
CDX4O14627 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.69■□□□□ 0.9
CDX4O14627 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
CDX4O14627 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.69■□□□□ 0.9
CDX4O14627 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDX4O14627 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.69■□□□□ 0.9
CDX4O14627 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.69■□□□□ 0.9
CDX4O14627 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDX4O14627 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDX4O14627 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDX4O14627 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDX4O14627 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.68■□□□□ 0.9
CDX4O14627 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.68■□□□□ 0.9
CDX4O14627 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CDX4O14627 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.68■□□□□ 0.9
CDX4O14627 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.68■□□□□ 0.9
CDX4O14627 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.68■□□□□ 0.9
CDX4O14627 FAM210CP-201ENST00000445714 574 ntBASIC20.68■□□□□ 0.9
CDX4O14627 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.68■□□□□ 0.9
CDX4O14627 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.68■□□□□ 0.9
CDX4O14627 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.68■□□□□ 0.9
CDX4O14627 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.68■□□□□ 0.9
CDX4O14627 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.68■□□□□ 0.9
CDX4O14627 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDX4O14627 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CDX4O14627 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX4O14627 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDX4O14627 RPPH1-201ENST00000516869 333 ntBASIC20.67■□□□□ 0.9
CDX4O14627 AC243732.1-201ENST00000612648 864 ntBASIC20.67■□□□□ 0.9
CDX4O14627 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.67■□□□□ 0.9
CDX4O14627 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CDX4O14627 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.67■□□□□ 0.9
CDX4O14627 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.67■□□□□ 0.9
CDX4O14627 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDX4O14627 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX4O14627 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.66■□□□□ 0.9
CDX4O14627 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX4O14627 AC211429.1-201ENST00000415277 523 ntBASIC20.66■□□□□ 0.9
CDX4O14627 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.66■□□□□ 0.9
CDX4O14627 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.66■□□□□ 0.9
CDX4O14627 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
CDX4O14627 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.66■□□□□ 0.9
CDX4O14627 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.66■□□□□ 0.9
CDX4O14627 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.66■□□□□ 0.9
CDX4O14627 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.66■□□□□ 0.9
CDX4O14627 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX4O14627 KRT16P2-201ENST00000414673 1423 ntBASIC20.66■□□□□ 0.9
CDX4O14627 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDX4O14627 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CDX4O14627 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX4O14627 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX4O14627 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.66■□□□□ 0.9
CDX4O14627 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.65■□□□□ 0.9
CDX4O14627 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.65■□□□□ 0.9
CDX4O14627 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CDX4O14627 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.65■□□□□ 0.9
CDX4O14627 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.65■□□□□ 0.9
CDX4O14627 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.65■□□□□ 0.9
CDX4O14627 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDX4O14627 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.65■□□□□ 0.9
CDX4O14627 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CDX4O14627 Z99916.2-201ENST00000604037 246 ntBASIC20.65■□□□□ 0.9
CDX4O14627 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.65■□□□□ 0.9
CDX4O14627 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDX4O14627 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.64■□□□□ 0.9
CDX4O14627 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.64■□□□□ 0.89
CDX4O14627 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX4O14627 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.64■□□□□ 0.89
CDX4O14627 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX4O14627 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX4O14627 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.64■□□□□ 0.89
CDX4O14627 REXO1L12P-201ENST00000622156 912 ntBASIC20.64■□□□□ 0.89
CDX4O14627 FAM197Y4-202ENST00000622692 608 ntBASIC20.64■□□□□ 0.89
CDX4O14627 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDX4O14627 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
CDX4O14627 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms