Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.99■□□□□ 0.47
SDCBPO00560 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SDCBPO00560 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDCBPO00560 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SDCBPO00560 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDCBPO00560 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDCBPO00560 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDCBPO00560 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDCBPO00560 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC17.98■□□□□ 0.47
SDCBPO00560 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.98■□□□□ 0.47
SDCBPO00560 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.98■□□□□ 0.47
SDCBPO00560 DUX4L19-201ENST00000557448 1267 ntBASIC17.98■□□□□ 0.47
SDCBPO00560 SYT6-210ENST00000641643 1587 ntBASIC17.98■□□□□ 0.47
SDCBPO00560 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SDCBPO00560 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDCBPO00560 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDCBPO00560 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SDCBPO00560 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
SDCBPO00560 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SDCBPO00560 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDCBPO00560 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
SDCBPO00560 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC17.98■□□□□ 0.47
SDCBPO00560 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDCBPO00560 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDCBPO00560 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.97■□□□□ 0.47
SDCBPO00560 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDCBPO00560 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDCBPO00560 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC17.97■□□□□ 0.47
SDCBPO00560 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDCBPO00560 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDCBPO00560 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SDCBPO00560 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.97■□□□□ 0.47
SDCBPO00560 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.97■□□□□ 0.47
SDCBPO00560 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
SDCBPO00560 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.96■□□□□ 0.47
SDCBPO00560 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SDCBPO00560 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDCBPO00560 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDCBPO00560 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDCBPO00560 AC131212.1-201ENST00000613771 668 ntBASIC17.96■□□□□ 0.47
SDCBPO00560 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SDCBPO00560 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.96■□□□□ 0.47
SDCBPO00560 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDCBPO00560 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDCBPO00560 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.96■□□□□ 0.47
SDCBPO00560 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.96■□□□□ 0.46
SDCBPO00560 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC17.96■□□□□ 0.46
SDCBPO00560 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SDCBPO00560 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.95■□□□□ 0.46
SDCBPO00560 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
SDCBPO00560 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC17.95■□□□□ 0.46
SDCBPO00560 HES6-206ENST00000409574 738 ntTSL 2 BASIC17.95■□□□□ 0.46
SDCBPO00560 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.95■□□□□ 0.46
SDCBPO00560 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC17.95■□□□□ 0.46
SDCBPO00560 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SDCBPO00560 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SDCBPO00560 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SDCBPO00560 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDCBPO00560 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.95■□□□□ 0.46
SDCBPO00560 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SDCBPO00560 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.95■□□□□ 0.46
SDCBPO00560 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDCBPO00560 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDCBPO00560 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
SDCBPO00560 SERBP1P1-201ENST00000396021 1160 ntBASIC17.94■□□□□ 0.46
SDCBPO00560 AL136116.3-201ENST00000402907 1138 ntBASIC17.94■□□□□ 0.46
SDCBPO00560 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SDCBPO00560 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SDCBPO00560 AC079089.2-201ENST00000531211 1277 ntBASIC17.94■□□□□ 0.46
SDCBPO00560 AC104564.3-201ENST00000582367 638 ntBASIC17.94■□□□□ 0.46
SDCBPO00560 AL138724.1-201ENST00000606771 1088 ntBASIC17.94■□□□□ 0.46
SDCBPO00560 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDCBPO00560 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SDCBPO00560 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.94■□□□□ 0.46
SDCBPO00560 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SDCBPO00560 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SDCBPO00560 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDCBPO00560 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms